View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16360_low_1 (Length: 511)

Name: NF16360_low_1
Description: NF16360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16360_low_1
NF16360_low_1
[»] chr8 (7 HSPs)
chr8 (81-476)||(27067412-27067806)
chr8 (32-79)||(27067297-27067344)
chr8 (38-84)||(18170485-18170533)
chr8 (38-84)||(18634053-18634101)
chr8 (38-80)||(24669445-24669489)
chr8 (38-80)||(40332203-40332247)
chr8 (32-85)||(25566848-25566903)
[»] chr7 (4 HSPs)
chr7 (32-87)||(27945046-27945103)
chr7 (38-85)||(21880159-21880208)
chr7 (38-85)||(28155577-28155626)
chr7 (32-85)||(24339649-24339704)
[»] scaffold0044 (1 HSPs)
scaffold0044 (32-80)||(53192-53242)
[»] scaffold0018 (1 HSPs)
scaffold0018 (36-80)||(192250-192296)
[»] chr1 (4 HSPs)
chr1 (32-80)||(6612168-6612218)
chr1 (38-85)||(41877473-41877522)
chr1 (32-86)||(24577183-24577239)
chr1 (40-85)||(31015050-31015097)
[»] scaffold0049 (1 HSPs)
scaffold0049 (38-85)||(63780-63829)
[»] scaffold0004 (1 HSPs)
scaffold0004 (42-85)||(92814-92859)
[»] chr6 (5 HSPs)
chr6 (38-85)||(7977833-7977882)
chr6 (32-86)||(10770671-10770727)
chr6 (32-85)||(12696331-12696386)
chr6 (32-85)||(16766704-16766759)
chr6 (24-85)||(21395297-21395359)
[»] chr4 (1 HSPs)
chr4 (38-85)||(847958-848007)
[»] chr5 (2 HSPs)
chr5 (42-80)||(6326304-6326344)
chr5 (24-85)||(19579708-19579771)
[»] chr3 (3 HSPs)
chr3 (40-78)||(4990972-4991012)
chr3 (32-85)||(9800047-9800102)
chr3 (32-85)||(49651783-49651838)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 81 - 476
Target Start/End: Original strand, 27067412 - 27067806
Alignment:
Q  81 tttagtgtaagatactaacatttaaagtatttatgcaacaattaattattggacaacaaaatagtgatgaaatgaagnnnnnnntaaacttacagtgagt 180  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  27067412 tttagtgtaagatactatcatttaaagtatttatgcaacaattaattattggacaacaaaatagtgatgaaatgaagaaaaaa-taaacttacagtgagt 27067510  T
Q  181 atggagagaaggatgaagagggtgtgaataatgtgaccaagttgtttctgcattttcttcatgaattatgtgaatatttatgtttatacttcttcaatgg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27067511 atggagagaaggatgaagagggtgtgaataatgtgaccaagttgtttctgcattttcttcatgaattatgtgaatatttatgtttatatttcttcaatgg 27067610  T
Q  281 tttctatagagataacattgagaaagagtgaaggaagggataaggtggaaagtgtagtgagtttcagtgttgctgtaaccaataatttatagaattaaag 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27067611 tttctatagagataacattgagaaagagtgaaggaagggataaggtggaaagtgtagtgagtttcagtgttgctgtaagcaataatttatagaattaaag 27067710  T
Q  381 tagtttgtactgnnnnnnncaaaataaaattatgttgccatgtaagcaataactgagatttttgatagatcttgtcacggataattttagcattag 476  Q
    ||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27067711 tagtttgtactgtttttttcaaaataaaattatgttgtcatgtaagcaataactgagatttttgatagatcttgtcaccgataattttagcattag 27067806  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 27067297 - 27067344
Alignment:
Q  32 acacggcaccgacacttgtaattacagaattatgtaattttctcaaat 79  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  27067297 acacgacactgacacttgtaattacagaattatgtaattttctcaaat 27067344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 18170485 - 18170533
Alignment:
Q  38 caccgacacttgtaattaca--gaattatgtaattttctcaaattttta 84  Q
    |||||||| |||||||||||  ||||||||||||||| |||||||||||    
T  18170485 caccgacatttgtaattacattgaattatgtaattttttcaaattttta 18170533  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 18634053 - 18634101
Alignment:
Q  38 caccgacacttgtaattaca--gaattatgtaattttctcaaattttta 84  Q
    |||||||| |||||||||||  ||||||||||||||| |||||||||||    
T  18634053 caccgacatttgtaattacattgaattatgtaattttttcaaattttta 18634101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 24669489 - 24669445
Alignment:
Q  38 caccgacacttgtaattaca--gaattatgtaattttctcaaatt 80  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||    
T  24669489 caccgacacttgtaattacactgaattatgtaatttcctcaaatt 24669445  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 40332247 - 40332203
Alignment:
Q  38 caccgacacttgtaattaca--gaattatgtaattttctcaaatt 80  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||    
T  40332247 caccgacacttgtaattacactgaattatgtgattttctcaaatt 40332203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 25566903 - 25566848
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  25566903 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 25566848  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 27945103 - 27945046
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagtg 87  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  27945103 acacgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtg 27945046  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 21880208 - 21880159
Alignment:
Q  38 caccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  21880208 caccgacacttgtaattacactgaattatgtaattttctcaaattattag 21880159  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 28155626 - 28155577
Alignment:
Q  38 caccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  28155626 caccgacacttgtaattacaccgaattatgtaattttctcaaattattag 28155577  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 24339704 - 24339649
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  24339704 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 24339649  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 53242 - 53192
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 80  Q
    ||||||||||||||||| ||||||||  ||||||||| |||||||||||||    
T  53242 acacggcaccgacacttataattacactgaattatgtgattttctcaaatt 53192  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 192250 - 192296
Alignment:
Q  36 ggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 80  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||    
T  192250 ggcacagacacttgtaattacaccgaattatgtaattttctcaaatt 192296  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 6612168 - 6612218
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 80  Q
    ||||| ||||||||||||||||||||  ||||||||||||||| |||||||    
T  6612168 acacgacaccgacacttgtaattacactgaattatgtaattttttcaaatt 6612218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 41877473 - 41877522
Alignment:
Q  38 caccgacacttgtaattacag--aattatgtaattttctcaaatttttag 85  Q
    ||||||||||||||||||||   |||||||||||||||||||||| ||||    
T  41877473 caccgacacttgtaattacactaaattatgtaattttctcaaattattag 41877522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 24577183 - 24577239
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 86  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| |||||    
T  24577183 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagt 24577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 31015097 - 31015050
Alignment:
Q  40 ccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||||||||||||||||  ||||||||| ||||||||||||| ||||    
T  31015097 ccgacacttgtaattacactgaattatgtgattttctcaaattattag 31015050  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 63829 - 63780
Alignment:
Q  38 caccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  63829 caccgacacttgtaattgcactgaattatgtaattttctcaaattattag 63780  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 92859 - 92814
Alignment:
Q  42 gacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||    
T  92859 gacacttgtaattacactgaattatgtaattttctcaaattattag 92814  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 7977833 - 7977882
Alignment:
Q  38 caccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||| ||||    
T  7977833 caccgacacttgtaattacactgaattatgtaattttttcaaattattag 7977882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 10770671 - 10770727
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 86  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| |||||    
T  10770671 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagt 10770727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 12696386 - 12696331
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||| ||| ||||||||||||||||  ||||||||||||||| ||||||| ||||    
T  12696386 acacgacactgacacttgtaattacactgaattatgtaattttttcaaattattag 12696331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 16766759 - 16766704
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  16766759 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 16766704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 21395297 - 21395359
Alignment:
Q  24 cgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||||| ||||| ||||||||||||||||||||   |||||||| ||||||||||||| ||||    
T  21395297 cgacactgacacgacaccgacacttgtaattacactaaattatgt-attttctcaaattattag 21395359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 848007 - 847958
Alignment:
Q  38 caccgacacttgtaattacag--aattatgtaattttctcaaatttttag 85  Q
    |||||||||||||||||| ||  |||||||||||||||||||||| ||||    
T  848007 caccgacacttgtaattatagtgaattatgtaattttctcaaattattag 847958  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 6326304 - 6326344
Alignment:
Q  42 gacacttgtaattaca--gaattatgtaattttctcaaatt 80  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  6326304 gacacttgtaattacactgaattatgtaattttctcaaatt 6326344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 19579771 - 19579708
Alignment:
Q  24 cgacactcacacggcaccgacacttgtaatt--acagaattatgtaattttctcaaatttttag 85  Q
    ||||||| ||||| |||||||||||||||||  ||  |||||||| ||||||||||||| ||||    
T  19579771 cgacactgacacgacaccgacacttgtaattgcactaaattatgtgattttctcaaattattag 19579708  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 4990972 - 4991012
Alignment:
Q  40 ccgacacttgtaattaca--gaattatgtaattttctcaaa 78  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  4990972 ccgacacttgtaattacactgaattatgtaattttctcaaa 4991012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 9800102 - 9800047
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||| |||||||||||  |||||||  ||||||||||||||||||||||| ||||    
T  9800102 acacgacaccgacacttacaattacacggaattatgtaattttctcaaattattag 9800047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 49651783 - 49651838
Alignment:
Q  32 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 85  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  49651783 acacgacaccgacacttgtaattacagtgaattatgtgattttttcaaattattag 49651838  T

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