View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16360_low_8 (Length: 354)

Name: NF16360_low_8
Description: NF16360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16360_low_8
NF16360_low_8
[»] chr1 (3 HSPs)
chr1 (1-340)||(34974798-34975136)
chr1 (98-340)||(34988608-34988851)
chr1 (43-340)||(34979508-34979794)
[»] chr3 (21 HSPs)
chr3 (170-330)||(22178872-22179032)
chr3 (169-330)||(21936607-21936768)
chr3 (36-330)||(22657923-22658239)
chr3 (169-339)||(22621762-22621932)
chr3 (169-332)||(30990127-30990290)
chr3 (248-330)||(22104256-22104338)
chr3 (242-329)||(2806817-2806904)
chr3 (240-340)||(22649006-22649106)
chr3 (170-329)||(22033981-22034140)
chr3 (245-329)||(2789917-2790001)
chr3 (185-329)||(22010301-22010445)
chr3 (185-329)||(22186467-22186611)
chr3 (170-329)||(22113844-22114003)
chr3 (239-321)||(2818110-2818192)
chr3 (263-329)||(21945181-21945247)
chr3 (246-329)||(2796921-2797004)
chr3 (245-327)||(2768628-2768710)
chr3 (246-327)||(2748558-2748639)
chr3 (244-321)||(2758772-2758849)
chr3 (244-312)||(2856322-2856390)
chr3 (264-329)||(5412485-5412550)
[»] scaffold0691 (1 HSPs)
scaffold0691 (239-329)||(6647-6737)
[»] chr7 (2 HSPs)
chr7 (251-317)||(873405-873471)
chr7 (251-317)||(1234682-1234748)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 34974798 - 34975136
Alignment:
Q  1 tggttgtataaatatcatttctcaataattactatcaacttgctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcataga 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  34974798 tggttgtataaatatcatttctcgataattattatcaacttgctcaaaatattatttacctaagactaagggaaactccgtcttccagtgactgcataga 34974897  T
Q  101 ttgcactaaacaagtctcagttatgagtaactttaatcttcatctcacagaataacaaaaaatctcacaatggcagaaatagcagtgtcttttgctatta 200  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  34974898 ttgcactaaactagtctcagttatgagtaactttaatct-catctcacagaataacaaaaaatatcacaatggcagaaatagcagtgtcttttgctattg 34974996  T
Q  201 accaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagcctt 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974997 accaactgcttccattgttaacagcaaaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagcctt 34975096  T
Q  301 cctcaaagatgctgatagaagagctgcagcagaagaagac 340  Q
    |||||||||| ||||||||||||||||||| |||| ||||    
T  34975097 cctcaaagattctgatagaagagctgcagctgaaggagac 34975136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 98 - 340
Target Start/End: Original strand, 34988608 - 34988851
Alignment:
Q  98 agattgcactaaacaagtctcagttatgagtaactt-taatcttcatctcacagaataacaaaaaatctcacaatggcagaaatagcagtgtcttttgct 196  Q
    ||||||||| |||||||||||| ||| |||||| || || ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||    
T  34988608 agattgcaccaaacaagtctcaattacgagtaaattgtagtcttcgtctcatagaataacaaaaaatcttacaatggcagaaatggcagtgtcttttgct 34988707  T
Q  197 attaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaag 296  Q
    ||||| |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  34988708 attaagcaactgcttccattgttaacggaagaaaccaaactactgaaaggtgttcacaaagaatttgcagacattaaatatgaactggaaagcatccaaa 34988807  T
Q  297 ccttcctcaaagatgctgatagaagagctgcagcagaagaagac 340  Q
    |||||||  ||||||||||||||||||||||||| |||| ||||    
T  34988808 ccttccttgaagatgctgatagaagagctgcagctgaaggagac 34988851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 43 - 340
Target Start/End: Original strand, 34979508 - 34979794
Alignment:
Q  43 ctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcatagattgcactaaacaagtctcagttatgagtaactttaatcttca 142  Q
    |||||||||||||||| | ||||||||||||||||| |||||||| | || ||| ||||||||||| ||||||             || | || |||||     
T  34979508 ctcaaaatattatttaacaaggactaagggaaactcagtcttccattaaccgcaaagattgcactacacaagta------------aattgtagtcttct 34979595  T
Q  143 tctcacagaataacaaaaaatctcacaa-tggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactg 241  Q
    |||||||||||| |||||| |||||||| |||||||||  |||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||     
T  34979596 tctcacagaatatcaaaaattctcacaaatggcagaaaaggcagtgtcttttgctattgaccaactgcttccattgttaacataagaaaccaaactacta 34979695  T
Q  242 aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagac 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| ||||    
T  34979696 aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattgaagccttccttaaagatgctgatagaagagctgcagctgaaggagac 34979794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 22178872 - 22179032
Alignment:
Q  170 atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca 269  Q
    ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||  ||||  |||  | || |||||||||| ||| ||||||| ||| |    
T  22178872 atggcagaaatggcagtttcttttgctattgaccaactgcttccattgttaacacaagaagtcaatcttctcaaaggtgttcccaaggaatttgaagata 22178971  T
Q  270 ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagc 330  Q
    ||||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  22178972 ttaaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagc 22179032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 330
Target Start/End: Original strand, 21936607 - 21936768
Alignment:
Q  169 aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac 268  Q
    |||||||||||| || ||||||||||||||| ||||||| ||||| ||||| |||| ||||  |||  | || |||||||||||||| ||||||| ||||    
T  21936607 aatggcagaaatggctgtgtcttttgctattgaccaacttcttccgttgttgacagaagaagtcaatcttctcaaaggtgttcacaaggaatttggagac 21936706  T
Q  269 attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagc 330  Q
    |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||||||||    
T  21936707 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagc 21936768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 330
Target Start/End: Complemental strand, 22658239 - 22657923
Alignment:
Q  36 caacttgctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcatagattgcactaaacaagtctcagttatgagtaactt-t 134  Q
    |||||||||||||| ||||| || | |||||  |||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||| |||||| || |    
T  22658239 caacttgctcaaaaaattatgtaacaaggacatagggaaactcagtcttccactaactacatagattgcactaaacaagtctcaattaggagtaaattgt 22658140  T
Q  135 aatcttcatctcaca--------------------gaataacaaaaaa-tctcacaatggcagaaatagcagtgtcttttgctattaaccaactgcttcc 213  Q
    | |||||||||||||                    ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||| |||||||    
T  22658139 agtcttcatctcacacaagcagtcttcatctcatagaataacaaaaaaatctcataatggcagaaatagcggtgtcttttgctattgaccaattgcttcc 22658040  T
Q  214 attgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgct 313  Q
    | ||||||||| ||||| |||  | || ||||||||||||||  ||||| |||| |||||| ||||||| || || || | ||||||||| || || |||    
T  22658039 actgttaacaggagaaatcaatctgctcaaaggtgttcacaagaaattttcagatattaaagatgaactggagagtatccgagccttccttaaggacgct 22657940  T
Q  314 gatagaagagctgcagc 330  Q
    || ||||||||| ||||    
T  22657939 gacagaagagctacagc 22657923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 339
Target Start/End: Complemental strand, 22621932 - 22621762
Alignment:
Q  169 aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac 268  Q
    |||||||||||| ||||||||||||||  || ||||| | |||||||||||||  | |||| |||  || || || ||  ||||||||||||||||||||    
T  22621932 aatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagac 22621833  T
Q  269 attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaaga 339  Q
    |||||| ||||||| |||||||| ||||||||||| || ||||||||||||||||||||||  ||||||||    
T  22621832 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaagaaga 22621762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 30990290 - 30990127
Alignment:
Q  169 aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac 268  Q
    |||||||||||| ||||||||||| | |||| | ||||| |||||| ||||||  | |||| ||||  | || | |||||||||||| |||||| ||||     
T  30990290 aatggcagaaattgcagtgtctttagttattgatcaactacttccactgttaagggaagaagccaatctgctaagaggtgttcacaaggaattttcagat 30990191  T
Q  269 attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcag 332  Q
    |||||| ||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  30990190 attaaagatgaacttgaaagcattcaagcctttcttaaagatgctgataaaagagctgcagcag 30990127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 22104256 - 22104338
Alignment:
Q  248 gttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagc 330  Q
    |||||||| |||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  22104256 gttcacaaggaatttgcagaccttaaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagc 22104338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 2806817 - 2806904
Alignment:
Q  242 aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    |||||||| |||| ||||||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||    
T  2806817 aaaggtgtacacacagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcag 2806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 22649106 - 22649006
Alignment:
Q  240 tgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaaga 339  Q
    |||||||  ||||||| ||||||||| |||||||| ||||||| || | ||| ||||||| ||| || |||||||||||||||||||| || ||||||||    
T  22649106 tgaaaggcattcacaacgaatttgcaaacattaaagatgaactggagatcatccaagcctcccttaaggatgctgatagaagagctgccgctgaagaaga 22649007  T
Q  340 c 340  Q
    |    
T  22649006 c 22649006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 22033981 - 22034140
Alignment:
Q  170 atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca 269  Q
    ||||| ||||| || |||||||| | | || ||||||| |||||| ||||||| | |||| ||||  |  ||| ||| |||||||| || || ||||| |    
T  22033981 atggcggaaatggcggtgtctttagttgttgaccaactacttccactgttaacggaagaagccaagctgttgagaggcgttcacaaggagttcgcagaga 22034080  T
Q  270 ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||| ||||||| |||||||||||||| ||||| || |||||||||| |||||| ||||    
T  22034081 ttaaagatgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcag 22034140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 2789917 - 2790001
Alignment:
Q  245 ggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||| |||||||| |||  |||||| ||| ||||||| || |||||||||| ||||||||||||||| |||| |||||||||||    
T  2789917 ggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcag 2790001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 329
Target Start/End: Original strand, 22010301 - 22010445
Alignment:
Q  185 gtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcg 284  Q
    |||||||| | |||| ||||||| |||||| ||||||  | |||||||||  |  ||| |||  ||||||| || |||||| ||||||||  |||||| |    
T  22010301 gtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggagtttgcaaacattaaagctgaactgg 22010400  T
Q  285 aaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||||||||||| ||||| || |||||||||| |||||| ||||    
T  22010401 aaagcattcaagcattcctgaaggatgctgataaaagagcagcag 22010445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 329
Target Start/End: Original strand, 22186467 - 22186611
Alignment:
Q  185 gtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcg 284  Q
    |||||||| | |||| ||||||| |||||| ||||||  | |||||||||  |  ||| |||  ||||||| || |||||| ||||||||  |||||| |    
T  22186467 gtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggattttgcaaacattaaagctgaactgg 22186566  T
Q  285 aaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||||||||||| ||||| || |||||||||| |||||| ||||    
T  22186567 aaagcattcaagcattcctgaaggatgctgataaaagagcagcag 22186611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 22113844 - 22114003
Alignment:
Q  170 atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca 269  Q
    |||||||||||  | |||||||| | | || ||||||| |||||| ||||||  | |||| ||||  |  ||| ||| |||||||| || || ||||| |    
T  22113844 atggcagaaatgtcggtgtctttagttgttgaccaactacttccactgttaagggaagaagccaagctgttgagaggcgttcacaaggagttcgcagaga 22113943  T
Q  270 ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||| ||||||| |||||||||||||| ||||| || |||||||||| |||||| ||||    
T  22113944 ttaaagatgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcag 22114003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 2818110 - 2818192
Alignment:
Q  239 ctgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaag 321  Q
    |||| |||||| |||| ||| ||| ||||||| ||| ||||||| |||||||| |||| ||||||||||||||| ||||||||    
T  2818110 ctgagaggtgtacacagagatttttcagacatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaag 2818192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 21945181 - 21945247
Alignment:
Q  263 gcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||| |||||| ||||||| |||||||||||||| |||||||| |||||||||| |||||| ||||    
T  21945181 gcagagattaaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcag 21945247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 2796921 - 2797004
Alignment:
Q  246 gtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    |||| |||||||| ||| ||||||| | | ||||||| || ||||||||||  |||||||||||||| |||| |||||||||||    
T  2796921 gtgtgcacaaagatttttcagacatcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcag 2797004  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 2768628 - 2768710
Alignment:
Q  245 ggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgc 327  Q
    ||||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| || ||||| |||||    
T  2768628 ggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 2768710  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 2748558 - 2748639
Alignment:
Q  246 gtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgc 327  Q
    |||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| || ||||| |||||    
T  2748558 gtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 2748639  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 2758772 - 2758849
Alignment:
Q  244 aggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaag 321  Q
    |||||| |||||||| ||   |||||| ||| ||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  2758772 aggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaag 2758849  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 2856390 - 2856322
Alignment:
Q  244 aggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgc 312  Q
    |||||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| |||||||||||||||    
T  2856390 aggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 2856322  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 5412485 - 5412550
Alignment:
Q  264 cagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||||| ||| ||||||| |||| ||||||| |||||||||||||||| || | ||| |||||||    
T  5412485 cagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgcagacaaaagggctgcag 5412550  T

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Target: scaffold0691 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 6737 - 6647
Alignment:
Q  239 ctgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    |||| |||||| |||| ||| ||| ||||||| ||| ||||||| ||||||||||||  ||||||||||||||| || ||||  |||||||    
T  6737 ctgagaggtgtacacacagattttacagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcag 6647  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 873471 - 873405
Alignment:
Q  251 cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgata 317  Q
    ||||| || ||||||||||||||| ||||||| ||||| |||||||| ||||| || ||||||||||    
T  873471 cacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattccttaaggatgctgata 873405  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 1234748 - 1234682
Alignment:
Q  251 cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgata 317  Q
    ||||| || ||||||||||||||| ||||||| ||||| |||||||| ||||| || ||||||||||    
T  1234748 cacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattccttaaggatgctgata 1234682  T

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