View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16361_high_1 (Length: 727)

Name: NF16361_high_1
Description: NF16361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16361_high_1
NF16361_high_1
[»] chr7 (1 HSPs)
chr7 (16-631)||(22187408-22188043)


Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 631
Target Start/End: Complemental strand, 22188043 - 22187408
Alignment:
Q  16 caaatattacactaaaaaagagacttgaagaattgtaattcttctctctttgttaatgagatcttaacaatttagccaatactcgtaaaaacaaattata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  22188043 caaatattacactaaaaaagagacttgaagaattgtaattcttctctctttgttaatgagatcttaacaatttagccaatactcataaatacaaattata 22187944  T
Q  116 acatattttacatattcaatatataaatgatcacgaaccacatatcttttaggattcgagacacaatcgttgataaagcaggatgagacatgaactacac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22187943 acatattttacatattcaatatataaatgatcacgaaccacatatcttttaggattcgagacacaatcgttgataaagcatgatgagacatgaactacac 22187844  T
Q  216 tcatgaccgtctaaattttaggtttaggtttgtttctcatcgtatactcgattgaccggtaacataacatttaaatagctaaacaatgttgatgacatat 315  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22187843 tcatgaccgtctaaattttaggtttaggtttatttctcatcgtatactcgattgaccggtaacataacatttaaatagctaaacaatgttaatgacatat 22187744  T
Q  316 ctc---ttaggcctaacaaaatagttcaacctattacgatccattcagagacacaaac---------------taccctcataactaattagattttaca 397  Q
    |||   |||| |||||||||||||||||||||||||| ||  ||| ||||||||||||               ||||||||| |||||||||||||||||    
T  22187743 ctcttattagacctaacaaaatagttcaacctattacaattaatttagagacacaaactaccctcattactaataccctcattactaattagattttaca 22187644  T
Q  398 tttagt--tatagctaaacgactgaagacagataatatcataaactaaacagaatagttgaaatcacaatttgaattaaaaatgtgatttgtgtataaac 495  Q
    ||||||  |||||||||||||| ||||| |||||||   |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22187643 tttagttatatagctaaacgaccgaagatagataattcgataaactaatgagaatagttgaaatcacaatttgaattaaaaatgtgatttgtgtataaac 22187544  T
Q  496 aaagagtgaaatatataatgaatgggtaacagcatgtatgtatctatagactgtaagtgatcatgtgtgtcccttatcactcgcgtgccctaacctttct 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22187543 aaagagtgaaatatataatgaatgggtaacagcatgtatgtatctatagactgtaagtgatcatgtgtgtcccttatcactcgcgtgccctaacctttct 22187444  T
Q  596 ctctttctcgcataataggcgctgaatctgacgtac 631  Q
    ||||||||||||||||||||||||||||||||||||    
T  22187443 ctctttctcgcataataggcgctgaatctgacgtac 22187408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University