View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16361_high_10 (Length: 218)

Name: NF16361_high_10
Description: NF16361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16361_high_10
NF16361_high_10
[»] chr3 (26 HSPs)
chr3 (14-202)||(19333380-19333568)
chr3 (14-202)||(18164545-18164733)
chr3 (14-140)||(19460977-19461103)
chr3 (14-153)||(19375126-19375265)
chr3 (14-136)||(19399169-19399291)
chr3 (14-202)||(16676590-16676784)
chr3 (14-140)||(18115410-18115536)
chr3 (14-202)||(19419375-19419566)
chr3 (15-202)||(17728110-17728297)
chr3 (15-202)||(19029339-19029526)
chr3 (14-132)||(19436333-19436451)
chr3 (14-202)||(19413582-19413773)
chr3 (18-137)||(17941192-17941311)
chr3 (14-136)||(18022257-18022379)
chr3 (14-139)||(19392583-19392708)
chr3 (18-138)||(18015553-18015673)
chr3 (14-202)||(19380285-19380476)
chr3 (14-138)||(18107899-18108023)
chr3 (14-132)||(18102895-18103013)
chr3 (18-132)||(19350862-19350976)
chr3 (18-123)||(18143710-18143815)
chr3 (14-137)||(14896819-14896942)
chr3 (14-132)||(25462503-25462621)
chr3 (20-132)||(18146283-18146395)
chr3 (91-132)||(19424042-19424083)
chr3 (169-202)||(18115348-18115381)
[»] chr6 (1 HSPs)
chr6 (14-147)||(13667303-13667436)
[»] chr8 (1 HSPs)
chr8 (14-139)||(8458931-8459056)
[»] chr4 (1 HSPs)
chr4 (37-132)||(15531816-15531911)
[»] scaffold2156 (1 HSPs)
scaffold2156 (14-132)||(359-477)
[»] scaffold0640 (1 HSPs)
scaffold0640 (14-132)||(4853-4971)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 19333568 - 19333380
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19333568 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 19333469  T
Q  114 caaagattcatctcacctttcaaaaatctgattgactcatcttcaaaacgaggtttgagatcaagttctgtaactcttccggtaatgtt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19333468 caaagattcatctcacctttcaaaaatctgattgactcatcttcaaaacgaggtttgagatcaagttctgtaactcttccggtaatgtt 19333380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 18164733 - 18164545
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||||| ||||||| |||| |||| |||| ||||||| |||||  |||| |||||||||||||||| |||||||||||||||||||||||||    
T  18164733 agatgaatgtgtgaagttgtgttgaattgatgtaattcttatcacatcaaaatcattaagactcaaatccaagtgactgagaaactcaagttctagaata 18164634  T
Q  114 caaagattcatctcacctttcaaaaatctgattgactcatcttcaaaacgaggtttgagatcaagttctgtaactcttccggtaatgtt 202  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||| || |||||||||||||||||||||    
T  18164633 caaagattcatctcacctttcaaatatctgattggctcatcttcaaaattaggtttgagatcaatttttgtaactcttccggtaatgtt 18164545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 19461103 - 19460977
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||||||||||||| |||||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19461103 agatgaatgtgtgatgttgtgttgaatggatggaaatcttatcacatcaaattcattcagactcaaatccaagtaactgagaaactcaagttctagaata 19461004  T
Q  114 caaagattcatctcacctttcaaaaat 140  Q
    |||||||||||||||||||| ||||||    
T  19461003 caaagattcatctcaccttttaaaaat 19460977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 19375265 - 19375126
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||||| ||||||| ||||||| |||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||    
T  19375265 agatgaatgtgtgaagttgtgttgaatggacggaattcttatcacgtcaaattcattgaaactcaaatccaagtaactgagaaactcaagttctagaata 19375166  T
Q  114 caaagattcatctcacctttcaaaaatctgattgactcat 153  Q
     |||||||||||||||||||||||| | ||| ||||||||    
T  19375165 taaagattcatctcacctttcaaaagtttgactgactcat 19375126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 19399291 - 19399169
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||| | |||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  19399291 agatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaata 19399192  T
Q  114 caaagattcatctcacctttcaa 136  Q
    || ||||||||||||||||||||    
T  19399191 cagagattcatctcacctttcaa 19399169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 16676784 - 16676590
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||| |||||||| ||| ||| |||||||||||||| |||| | ||||||| |||||   ||||||||||||||| | |||||||||||||||||||||    
T  16676784 agatgcatgtgtgaggttttgttgaatggatggaattcttattaggtcaaattcattccagctcaaatccaagtaaattagaaactcaagttctagaata 16676685  T
Q  114 caaagattcatctcacctttcaaaaatctgattgactcatcttcaaaacgagg------tttgagatcaagttctgtaactcttccggtaatgtt 202  Q
    |||||||||||||||||||| || | | |||||| |||||| ||||||  |||      |||||||||||||| |||||||||||||||||||||    
T  16676684 caaagattcatctcaccttttaagactttgattggctcatcatcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatgtt 16676590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 18115536 - 18115410
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||||| ||||||| |||||||||||| | ||||||| |||||  ||||    |||||||||||||||||||||||||||||||||||||||    
T  18115536 agatgaatgtgtgaggttgtgttgaatggatggaaatcttatcacatcaaaatcatttgagctcaaatccaagtaactgagaaactcaagttctagaata 18115437  T
Q  114 caaagattcatctcacctttcaaaaat 140  Q
    |||||||||||||||||||||||||||    
T  18115436 caaagattcatctcacctttcaaaaat 18115410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 19419566 - 19419375
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| | ||||  |||  ||||||||||||||||||| |||||||||||||| | ||||    
T  19419566 agatgaatgtgtgatgttgtgttgaatggatggaattcttatcacattaaatttattatgactcaaatccaagtaactaagaaactcaagttcaaaaata 19419467  T
Q  114 caaagattcatctcacctttcaaaaatctgattgactcatcttc---aaaacgaggtttgagatcaagttctgtaactcttccggtaatgtt 202  Q
    ||||||||||||||||||| |||||   ||| |||||||| |||   ||||  ||  ||| ||| || ||||||||||||||||||||||||    
T  19419466 caaagattcatctcaccttccaaaacattgactgactcatattcaaaaaaataagtgttgcgattaatttctgtaactcttccggtaatgtt 19419375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 17728110 - 17728297
Alignment:
Q  15 gatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatac 114  Q
    |||||| |||||||||||||  |||||||||||||| ||||  | ||||||  ||| |  ||||||||||||||||| |||||||||||||| |||||||    
T  17728110 gatgaacgtgtgatgttgtgatgaatggatggaattcttatggcatcaaatttattgaagctcaaatccaagtaactaagaaactcaagttcaagaatac 17728209  T
Q  115 aaagattcatctcacctttcaaaaatctgattgactcatcttcaaaacgaggtttgagatcaagttctgtaactcttccggtaatgtt 202  Q
    |||||||||||||||||| |||||   ||| |  | ||||| || ||  |||||||||||||||||||||||||||||| ||||||||    
T  17728210 aaagattcatctcaccttccaaaacattgagttgcccatctacataattaggtttgagatcaagttctgtaactcttccagtaatgtt 17728297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 19029339 - 19029526
Alignment:
Q  15 gatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatac 114  Q
    |||||| |||||||||||||  |||||||||||||| ||||  | ||||||  ||| |  ||||||||||||||||| |||||||||||||| |||||||    
T  19029339 gatgaacgtgtgatgttgtgatgaatggatggaattcttatggcatcaaatttattgaagctcaaatccaagtaactaagaaactcaagttcaagaatac 19029438  T
Q  115 aaagattcatctcacctttcaaaaatctgattgactcatcttcaaaacgaggtttgagatcaagttctgtaactcttccggtaatgtt 202  Q
    |||||||||||||||||| |||||   ||| |  | ||||| || ||  |||||||||||||||||||||||||||||| ||||||||    
T  19029439 aaagattcatctcaccttccaaaacattgagttgcccatctacataattaggtttgagatcaagttctgtaactcttccagtaatgtt 19029526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 19436451 - 19436333
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||||||||||||| |||||| ||||||||| |||| ||||||| |||||  |||||| |||||||||||||||||| ||||||||||||| |||||||    
T  19436451 agatgaatgtgtgatattgtgttgaatggatgaaattcttatcacatcaaaatcattcacactcaaatccaagtaactaagaaactcaagttttagaata 19436352  T
Q  114 caaagattcatctcacctt 132  Q
    |||||||||||||||||||    
T  19436351 caaagattcatctcacctt 19436333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 19413773 - 19413582
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||||||||||||| ||||||  ||| | ||||||| ||||| |  ||||   |||  | |||||||||||||||||||||||||||||||||||||||    
T  19413773 agatgaatgtgtgatattgtgtttaatagttggaattcttatctcaccaaaataattgtggctcaaatccaagtaactgagaaactcaagttctagaata 19413674  T
Q  114 caaagattcatctcacctttcaa-aaat--ctgattgactcatcttcaaaacgaggtttgagatcaagttctgtaactcttccggtaatgtt 202  Q
    |||||||||||||| |||||||| ||||    ||||  |||||||||||||  |||||||||||||| || |||||||||||||||||||||    
T  19413673 caaagattcatctcccctttcaacaaataatcgattatctcatcttcaaaattaggtttgagatcaatttttgtaactcttccggtaatgtt 19413582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 17941311 - 17941192
Alignment:
Q  18 gaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaa 117  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||  |||   |||||||||||| |||||||||||||||||||| ||||||||||    
T  17941311 gaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaatttattatcactcaaatccaaataactgagaaactcaagttcaagaatacaaa 17941212  T
Q  118 gattcatctcacctttcaaa 137  Q
    ||||||||||||||| ||||    
T  17941211 gattcatctcaccttccaaa 17941192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 18022379 - 18022257
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||| ||||||||||||||| |||| ||||||||| ||||||| |||||| ||||  ||||||||||||| ||||| |||||||||||||| ||||||    
T  18022379 agatgagtgtgtgatgttgtgttgaatagatggaattcttatcacatcaaattcattatgactcaaatccaaataactaagaaactcaagttcaagaata 18022280  T
Q  114 caaagattcatctcacctttcaa 136  Q
    |||||||||| ||||||||||||    
T  18022279 caaagattcagctcacctttcaa 18022257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 19392708 - 19392583
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||||||| ||||||||| || |||||| ||||||| |||||||||||||  |||||   ||||||||||||||||| ||||||||||||| |||||||    
T  19392708 agatgaatgcgtgatgttgcgttgaatggctggaattcttatcacgtcaaaatcattcccgctcaaatccaagtaacttagaaactcaagttgtagaata 19392609  T
Q  114 caaagattcatctcacctttcaaaaa 139  Q
    ||||||||||||||||||| ||||||    
T  19392608 caaagattcatctcaccttccaaaaa 19392583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 18015673 - 18015553
Alignment:
Q  18 gaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaa 117  Q
    |||||||||||||||| | |||||||||||||  ||||||| |||||| |||| | |||||||||||||||||| ||||| |||||||||| ||||||||    
T  18015673 gaatgtgtgatgttgttttgaatggatggaatacttatcacatcaaattcattgaaactcaaatccaagtaactaagaaattcaagttctaaaatacaaa 18015574  T
Q  118 gattcatctcacctttcaaaa 138  Q
     ||||||||||||||||||||    
T  18015573 aattcatctcacctttcaaaa 18015553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 19380476 - 19380285
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||| ||||| ||| |||||||||||||| ||||||| |||||   |||   |||||||||||||||||| ||||||| |||||| ||||||    
T  19380476 agatgaatgtgtaatgttttgttgaatggatggaattcttatcacatcaaaattattttcactcaaatccaagtaactaagaaacttaagttcaagaata 19380377  T
Q  114 caaagattcatctcacctttcaaaaatctgattgactcatcttc---aaaacgaggtttgagatcaagttctgtaactcttccggtaatgtt 202  Q
    ||||||||||||||||||| ||||| | ||| || ||||| |||   ||||  ||  |||||||||| || ||||||||||| |||||||||    
T  19380376 caaagattcatctcaccttccaaaactttgactggctcatattcataaaaataagtgttgagatcaatttttgtaactcttctggtaatgtt 19380285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 18108023 - 18107899
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||||||||||||| |||||| |||||||||||||| |||| || |||||  |||||   |||||||| || ||||||||||||||||| || ||||||    
T  18108023 agatgaatgtgtgatattgtgttgaatggatggaattcttatgacatcaaaatcattccagctcaaatctaaataactgagaaactcaaggtcaagaata 18107924  T
Q  114 caaagattcatctcacctttcaaaa 138  Q
    |||||||||||||||||||||||||    
T  18107923 caaagattcatctcacctttcaaaa 18107899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 18103013 - 18102895
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||||   ||||   ||||||||||||||| |||||||||||||| | ||||||    
T  18103013 agatgaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaaatgattccagctcaaatccaagtaattgagaaactcaagtccaagaata 18102914  T
Q  114 caaagattcatctcacctt 132  Q
    ||||||||||| |||||||    
T  18102913 caaagattcatatcacctt 18102895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 19350976 - 19350862
Alignment:
Q  18 gaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaa 117  Q
    |||||||||||||| | | |||||||||||||  ||||||| |||||   ||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  19350976 gaatgtgtgatgtttttttgaatggatggaatagttatcacatcaaaatgattctcactcaaacccaagtaactgagaaactcaagttctagaatacaaa 19350877  T
Q  118 gattcatctcacctt 132  Q
    |||||||||||||||    
T  19350876 gattcatctcacctt 19350862  T

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Target: chr3; HSP #21
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 18143815 - 18143710
Alignment:
Q  18 gaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaa 117  Q
    |||||||||||||||||| |||||||||||||| ||||||  |||||  |||| |  ||||||||||||||||| |||||||||||||||||||||||||    
T  18143815 gaatgtgtgatgttgtgttgaatggatggaattcttatcatatcaaaatcattgaatctcaaatccaagtaactaagaaactcaagttctagaatacaaa 18143716  T
Q  118 gattca 123  Q
    ||||||    
T  18143715 gattca 18143710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 14896819 - 14896942
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||||||||||||| || ||  ||||||  ||||||| |||||   ||||| ||||||||| ||||||||||||||||| ||||| ||||||    
T  14896819 agatgaatgtgtgatgttgtgttgagtgactggaatacttatcacatcaaaatgattcatactcaaatctaagtaactgagaaactccagttcgagaata 14896918  T
Q  114 caaagattcatctcacctttcaaa 137  Q
    |||||| |||||||||||||||||    
T  14896919 caaagactcatctcacctttcaaa 14896942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 25462621 - 25462503
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||||||||||||||||| ||| || ||||||  |||| | || |||| ||||   ||| |||||||||||||||||||||||||||||||||| |    
T  25462621 agatgaatgtgtgatgttgtgttgaaaggctggaatacttatgatgttaaattcattatcacttaaatccaagtaactgagaaactcaagttctagaaca 25462522  T
Q  114 caaagattcatctcacctt 132  Q
    || ||||||||||||||||    
T  25462521 catagattcatctcacctt 25462503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 18146395 - 18146283
Alignment:
Q  20 atgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaaga 119  Q
    ||||||||| |||||| |||||||||||||| ||||||  |||||   |||   |||||||||||||||| | |||||||||||||| ||||||||||||    
T  18146395 atgtgtgatattgtgttgaatggatggaattcttatcatatcaaaataattatcactcaaatccaagtaattaagaaactcaagttcaagaatacaaaga 18146296  T
Q  120 ttcatctcacctt 132  Q
    |||||||||||||    
T  18146295 ttcatctcacctt 18146283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 19424083 - 19424042
Alignment:
Q  91 tgagaaactcaagttctagaatacaaagattcatctcacctt 132  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  19424083 tgagaaactcaagttcgagaatacaaagattgatctcacctt 19424042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 18115381 - 18115348
Alignment:
Q  169 tgagatcaagttctgtaactcttccggtaatgtt 202  Q
    |||||||||||| |||||||||||||||||||||    
T  18115381 tgagatcaagttttgtaactcttccggtaatgtt 18115348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 13667303 - 13667436
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    |||||||| ||||||||||||| ||||||||| |||| ||||||| |||||| ||||  ||||||||||||| || |||||||||| |||||||||||||    
T  13667303 agatgaatttgtgatgttgtgttgaatggatgaaatttttatcacatcaaattcattatgactcaaatccaaatagctgagaaacttaagttctagaata 13667402  T
Q  114 caaagattcatctcacctttcaaaaatctgattg 147  Q
    ||||||||||||| ||||||||||| | ||||||    
T  13667403 caaagattcatcttacctttcaaaactttgattg 13667436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 8459056 - 8458931
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||| |||||||||||||||| |||| ||||||||| ||||||| ||||||  ||  |  ||||||||||||||||| ||||||||||||||||||||     
T  8459056 agatgcatgtgtgatgttgtgttgaatcgatggaattcttatcacatcaaatttatgtaagctcaaatccaagtaactcagaaactcaagttctagaatg 8458957  T
Q  114 caaagattcatctcacctttcaaaaa 139  Q
     ||||||| |||| ||||| ||||||    
T  8458956 gaaagattgatcttaccttccaaaaa 8458931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 15531911 - 15531816
Alignment:
Q  37 gaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcacctt 132  Q
    |||||||||||||  ||| ||| |||||  ||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  15531911 gaatggatggaatgcttagcacatcaaaatcattccgactcaaatcgaagtaactaagaaactcaagttttagaatacaaagattcatctcacctt 15531816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 359 - 477
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||||| |||||||||||||| || ||  ||||| | |||| ||||||||  ||||    ||||||||||||||||| | |||||||||||||||||||    
T  359 agatgaacgtgtgatgttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagtaactcaaaaactcaagttctagaata 458  T
Q  114 caaagattcatctcacctt 132  Q
    |||||||||||||||||||    
T  459 caaagattcatctcacctt 477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 4971 - 4853
Alignment:
Q  14 agatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttctagaata 113  Q
    ||||||| |||||||||||||| || ||  ||||| | |||| ||||||||  ||||    ||||||||||||||||| | |||||||||||||||||||    
T  4971 agatgaacgtgtgatgttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagtaactcaaaaactcaagttctagaata 4872  T
Q  114 caaagattcatctcacctt 132  Q
    |||||||||||||||||||    
T  4871 caaagattcatctcacctt 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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