View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16361_high_6 (Length: 330)
Name: NF16361_high_6
Description: NF16361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16361_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 15284708 - 15284405
Alignment:
| Q |
8 |
caataatgtacttgtctcgtatacaatcatcggctaatcattcacaagtatacacattaactcataagatattctaatcgttttccccattctttacgta |
107 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15284708 |
caataatgtacttttatcgtatacaatcatcgactaatcattcacaagtatacacattaacacataagatattctaatcgttttcccccttctttacgta |
15284609 |
T |
|
| Q |
108 |
tccggatcatctcctcgaggatccaattttcttcttcatcatctccaaaataatctcattccaagtatctataggtcctggtaagcaccaatgaacacaa |
207 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15284608 |
tccggatcatctcctcgatgatccagatttcttcttcatcatctccaacaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaa |
15284509 |
T |
|
| Q |
208 |
tcattttgtacatattttggaactccatttacaaatggaaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15284508 |
tcattttgtacatattttggaactccatttgcaaatggaaaaggattcatataagcaccagcatgaccatctggtctcaacaatgccaattttgttatat |
15284409 |
T |
|
| Q |
308 |
caag |
311 |
Q |
| |
|
|||| |
|
|
| T |
15284408 |
caag |
15284405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 140 - 304
Target Start/End: Original strand, 15287339 - 15287503
Alignment:
| Q |
140 |
tcttcatcatctccaaaataatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttac |
239 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15287339 |
tcttcatcatctctacaaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgc |
15287438 |
T |
|
| Q |
240 |
aaatggaaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgtta |
304 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
15287439 |
aaatggaaaaggattcatgtaaggacctggatgaccatctggtctcaataatgccaatttagtta |
15287503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 298
Target Start/End: Complemental strand, 15263089 - 15262929
Alignment:
| Q |
138 |
cttcttcatcatctccaaaataatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccattt |
237 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
15263089 |
cttcttcatcatctctagaaaaatctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttc |
15262990 |
T |
|
| Q |
238 |
acaaatggaaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaatt |
298 |
Q |
| |
|
| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15262989 |
gcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaatt |
15262929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 313
Target Start/End: Original strand, 15256667 - 15256841
Alignment:
| Q |
139 |
ttcttcatcatctccaaaataatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccattta |
238 |
Q |
| |
|
|||||||| ||||||| || |||||||||||| || ||||||||||| || || |||||||||||||||||||| || ||| || |||||| ||||| |
|
|
| T |
15256667 |
ttcttcataatctccagaaaaatctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcattctgcacacgttctggaacaccattgg |
15256766 |
T |
|
| Q |
239 |
caaatggaaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagtg |
313 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
15256767 |
caaatggaaaagggtacatataaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaagtg |
15256841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 15265213 - 15265357
Alignment:
| Q |
160 |
atctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttacaaatggaaaaggattcatat |
259 |
Q |
| |
|
||||||||||| ||||| || ||||| || || ||||||||||||||||||||||| |||| || | |||| ||||| | ||||||||||||||||||| |
|
|
| T |
15265213 |
atctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaaccccattaaagaatggaaaaggattcatat |
15265312 |
T |
|
| Q |
260 |
aagcacctgcatgaccatctggtctcaacaatgccaattttgtta |
304 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
15265313 |
aaggacctggatgaccatctggtcttaacaaagccaattttgtta |
15265357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 138 - 311
Target Start/End: Complemental strand, 51383763 - 51383590
Alignment:
| Q |
138 |
cttcttcatcatctccaaaataatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccattt |
237 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
51383763 |
cttcttcatgatctccaaaaaaatctcattccaagtgtctataggtcctggcaaacaccaatgaacacaatcattttgtacatactttggaattccatta |
51383664 |
T |
|
| Q |
238 |
acaaatggaaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
311 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51383663 |
gcaaatggaaaaggattcatgtaggctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
51383590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 139 - 311
Target Start/End: Original strand, 44247983 - 44248155
Alignment:
| Q |
139 |
ttcttcatcatctccaaaataatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccattta |
238 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
44247983 |
ttcttcatcatctgcaaaaaaatctcattccaaatatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaac-cctttta |
44248081 |
T |
|
| Q |
239 |
-caaatggaaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
311 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
44248082 |
gcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
44248155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 138 - 311
Target Start/End: Original strand, 11806900 - 11807073
Alignment:
| Q |
138 |
cttcttcatcatctccaaaataatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccattt |
237 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||| ||||||| | || |
|
|
| T |
11806900 |
cttcttcatcatctccaaaaaaatctcattccaagtatcaataggtcctggcaagcaccaatgagtacaatcgttttgtacattctttggaattgtttta |
11806999 |
T |
|
| Q |
238 |
acaaatggaaaaggattcatataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
311 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11807000 |
gcaaatggaaaaggatacctataagctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
11807073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 6543659 - 6543709
Alignment:
| Q |
162 |
ctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcatt |
212 |
Q |
| |
|
||||||||| ||||| | |||||| ||||| |||||||||||||||||||| |
|
|
| T |
6543659 |
ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
6543709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 6554179 - 6554224
Alignment:
| Q |
167 |
tccaagtatctataggtcctggtaagcaccaatgaacacaatcatt |
212 |
Q |
| |
|
|||| ||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
6554179 |
tccatgtatctataggccctggcaaacaccaatgaacacaatcatt |
6554224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University