View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16361_high_8 (Length: 239)
Name: NF16361_high_8
Description: NF16361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16361_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 21597746 - 21597964
Alignment:
| Q |
1 |
ttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaacaggaacttcaacggcg |
100 |
Q |
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| T |
21597746 |
ttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattctaaggaatgaaaacgagccaccagcaacaggaacttcaacggcg |
21597845 |
T |
|
| Q |
101 |
aattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgagacgagcttcttgacctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
21597846 |
aattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgaaacgagcttcttgaccgg |
21597945 |
T |
|
| Q |
201 |
taacgacgaagataccaga |
219 |
Q |
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||||||||||||||||||| |
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| T |
21597946 |
taacgacgaagataccaga |
21597964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 11987510 - 11987687
Alignment:
| Q |
1 |
ttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaacaggaacttcaacggcg |
100 |
Q |
| |
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|||||||||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||| |||| || ||||| ||||| ||||||||||| ||| |
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| T |
11987510 |
ttcaaggagaatattcccggcagcaatgaaagcgaggaagtcaccgagttcgattcttaggaatcaaaacgaaccaccggcaacgggaacttcaactgcg |
11987609 |
T |
|
| Q |
101 |
aattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagca |
178 |
Q |
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|||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||| |
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| T |
11987610 |
aattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcggcgtaggagaggataatggaaggaccagca |
11987687 |
T |
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