View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16361_low_11 (Length: 237)
Name: NF16361_low_11
Description: NF16361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16361_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 16858691 - 16858913
Alignment:
| Q |
1 |
aacttgaagatagtgttgaactcttcattgaagccactgattttgaatgttaagaatataaaatcaccctttttgtcctnnnnnnntaaagaacacaatg |
100 |
Q |
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| T |
16858691 |
aacttgaagatagtgttgaactcttcattgaagccactgattttgaatgttaagaatataaaatcaccctttttgttctaaaaaaataaagaacacaatg |
16858790 |
T |
|
| Q |
101 |
tgtgttatttgaagatgaattagacaaaaatggtatttgaatttggtgannnnnnnnatgtgaaggaaaaattatgtttataacatgtggatctattttg |
200 |
Q |
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| T |
16858791 |
tgtgttatttgaagatgaattagacaaaaatggtatttgaatttggtga-tttttttatgtgaagg-aaaattatgttcataacatatagatccattttg |
16858888 |
T |
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| Q |
201 |
cgtctaaattatattaaatcaaata |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
16858889 |
cgtctaaattatattaaatcaaata |
16858913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 16870312 - 16870369
Alignment:
| Q |
88 |
aaagaacacaatgtgtgttatttgaagatgaattagacaaaaatggtatttgaatttg |
145 |
Q |
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|||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||| |
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| T |
16870312 |
aaagaacacaatgtgtgtgctttgaaggtaaattagacaaaaatggtctttgaatttg |
16870369 |
T |
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