View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16361_low_4 (Length: 363)
Name: NF16361_low_4
Description: NF16361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16361_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 394594 - 394259
Alignment:
| Q |
18 |
attaagggggtagattatatggatagaagacttgtttattgacggataatgatcataacctcttggaataacttccaaaagaagtggttacataaaaaca |
117 |
Q |
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| T |
394594 |
attaagggggtagattatatggatagaagacttgtttattgacggataatgatgataacctcttggaataatttccaaaagaagtggttacataaaaaca |
394495 |
T |
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| Q |
118 |
gaaattggtaactgccgcaacaagcagaaagtgtgagacacaaccaaccactaagagttagagatcctagtatctcccttccctaaccaataataaaaat |
217 |
Q |
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| T |
394494 |
gaaattggtaactgccgcaacaagcagaaagtgtgagacacaaccaaccactaagaattagagatcctagtatctcccttccctaaccaataataaaaat |
394395 |
T |
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| Q |
218 |
aacctgattgtttacatgtgccatcctttatccatttagacacacagcacactaacaaatacatatgggcctaattatttgggcctactaacagcttcca |
317 |
Q |
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| T |
394394 |
aacctgattgtttacatgtgccatcctttatccatttagacacacagcacactaacaaatacatatgggcctaattatttgggcctactaacagcttcca |
394295 |
T |
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| Q |
318 |
ccttagaactcgcctcacaaatacatctgccctttg |
353 |
Q |
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| T |
394294 |
ccttagaactcgcctcacaaatacatctgccttttg |
394259 |
T |
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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 11978491 - 11978412
Alignment:
| Q |
40 |
atagaagacttgtttattgacggataatgatcataacctcttggaataacttccaaaagaagtggttacataaaaacaga |
119 |
Q |
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| T |
11978491 |
atagaatacttgtttatttatggatattgatgataacctcttaaaataacttccaaaagaggtgattacataaaaacaga |
11978412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 22775987 - 22775905
Alignment:
| Q |
218 |
aacctgattgtttacatgtgccatcctttatccatt--tagacacacagcacactaacaaatacatatgggcctaattatttg |
298 |
Q |
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||||| || |||||||| |||||||||| || ||| || ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22775987 |
aacctaatggtttacatatgccatccttattctattcataaacacacaacacactaacaaatacatatgggcctaattatttg |
22775905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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