View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16361_low_6 (Length: 337)
Name: NF16361_low_6
Description: NF16361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16361_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 42466711 - 42467028
Alignment:
| Q |
1 |
atcaaagagaggtagttcatgcttcagctttagtaaattgcgtctaaaatgtgaagttgaaatatgaatcatccaatcttgatacaatataggtcaacaa |
100 |
Q |
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| T |
42466711 |
atcaaaaagaggtagttcatgcttaagctttagtaaattgcgtctaaaatgtgaagttgaaatatgaatcatccaatcttgatacaatataggtcaacaa |
42466810 |
T |
|
| Q |
101 |
ctgcataattttgtgatccaaattcaaccttttttcttgcataattaatgtgttgcatcatttgtcattggctttagtgatatcgtacttacaatgtgat |
200 |
Q |
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| T |
42466811 |
ctgcatgattttgtgatccaaattcaaccttttttcttgcataattaatgtgttgcatcatttgtcattggcttgagtgatatcatacttacaatgtgat |
42466910 |
T |
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| Q |
201 |
ttgttaataaaaaattgaatttcttagagtaccttgcgtgagaagtgaaggatttcgattctctttccaaggaaatggatattggttattggtgtacgtg |
300 |
Q |
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| T |
42466911 |
ttgttgataaaaatttgaatttcttagagtaccttgcgtgagaagtgaaggatttcgattctctttccaaggaaatggatattggttattggtgtacgtg |
42467010 |
T |
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| Q |
301 |
atgaatgtgggaggtgga |
318 |
Q |
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| T |
42467011 |
atgaatgtgggaggtgga |
42467028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 3183751 - 3183687
Alignment:
| Q |
254 |
ttcgattctctttccaaggaaatggatattggttattggtgtacgtgatgaatgtgggaggtgga |
318 |
Q |
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| T |
3183751 |
ttcgattttctttccaaggaaacgggtactggctattggtgtatgtgatgaacgtcggaggtgga |
3183687 |
T |
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