View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16361_low_9 (Length: 319)
Name: NF16361_low_9
Description: NF16361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16361_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 52719694 - 52719388
Alignment:
| Q |
1 |
ttcaccttcatcatcttcatcaaatcttcttcattaatgttttccaaatatacccagaataaaattaaaaaattctcaaacccataaattaaccacaagt |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52719694 |
ttcaccttcatcatcttcatcaaatcttc---attaatgttttccaaatatacccagaataaaattaaaaaattctcaaacccataaattaaccacaagt |
52719598 |
T |
|
| Q |
101 |
aatttgaaattgttgagtgctcatcctctcctctttgactctcgttctcttcttcctcctccacccataaatccccaaattattgccaatatctcttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52719597 |
aatttgaaattgttgagtgctcatcctctcctctttgactctcgttctcttcttcctcctccacccataaatccccaaattattgccaatatctcttctc |
52719498 |
T |
|
| Q |
201 |
aacataacagcacaaacccaatcattaacaatctcttctacctcatttttgtttgctttatcaatttatcttcttgttttcaaagcttccaagctaaact |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52719497 |
aacttaacagcacaaacccaatcattaacaatctcttctacctcatttttgtttgcttgatcaatttatcttcttgttttcaaagcttccaagctaaact |
52719398 |
T |
|
| Q |
301 |
atattcatct |
310 |
Q |
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|||||||||| |
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| T |
52719397 |
atattcatct |
52719388 |
T |
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