View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16362_high_2 (Length: 391)
Name: NF16362_high_2
Description: NF16362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16362_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 21 - 382
Target Start/End: Original strand, 23227852 - 23228233
Alignment:
| Q |
21 |
ggatcctctacagccagttttgcggtgtagtaagttgtagatgttagattaagggaaccaagtttatctctctcaacctaacgatctatgatcgactgta |
120 |
Q |
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| T |
23227852 |
ggatcctttacagccagttttgcgatgtagtaagttgtagatgttagattaagggaaccaagtttatctctctcgacctaacgatctatgatcgactgta |
23227951 |
T |
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| Q |
121 |
ccgtaat--------------------taaacacatgaaatagtcgcaaaatgcttattattaccgatatccaacaaaatgtgaaaaatgaatctcttcc |
200 |
Q |
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| T |
23227952 |
ccgtaatatagcccgaagaggatcaattgaacacatgaaatagtcgcaaaatgcttattattaccgatatccaacaaaatgtgaaaaatgaatctcttcc |
23228051 |
T |
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| Q |
201 |
cctaattacatctacaaccagtggcggaggcgcggagccttcatgggttttagtgggtcgttataaaattaattattactttttccatccaaaataccct |
300 |
Q |
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||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
23228052 |
cctaactatatctacaaccggtggcggaggcgcggagccttcatgggttttagtgggtcgttaaaaaattaattgttactttttccatccaaaataccct |
23228151 |
T |
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| Q |
301 |
ttgtttagattctataagccgaacagtaattcgacttcctaaatctaaacaatgtaaaaactgaattcaaggatagaattat |
382 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
23228152 |
ttgtttagattctataagccgaatagtaattcgacttcttaaatctaaacaatgtaaaaactgaattcaatgataaaattat |
23228233 |
T |
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