View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16362_low_1 (Length: 565)
Name: NF16362_low_1
Description: NF16362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16362_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 6 - 546
Target Start/End: Complemental strand, 39968063 - 39967523
Alignment:
| Q |
6 |
atttaatataaggatgacattaacactattgaaaaagttgcaatggaaattatgataggaaaagccttacttggattagtgctagtgataacagcagttc |
105 |
Q |
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| T |
39968063 |
atttaatataaggatgacattaacactattgaaaaagttgcaatggaaattatgataggaaaagccttacttggattagtgctagtgataacagcagttc |
39967964 |
T |
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| Q |
106 |
cgccaaaattgcagctatttggaacaggattcttatgataatacttattaaaggcgtaagaagcaagatgatgaatagaatttggattgtaacagcttcc |
205 |
Q |
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| T |
39967963 |
caccaaaattgcagctatttggaacaggattcttatgataatacttattaaaggcgtaagaagcaagatcatgaatagaatttggattgtaacagcttcc |
39967864 |
T |
|
| Q |
206 |
accaggttgaattgctgaacaatcagtgccaccatatccacaagcatagtccaatgcaacttgtaaaccaatttgtgatgcacttggacttgcaacacac |
305 |
Q |
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| T |
39967863 |
accaggttgaattgctgaacaatcagtgccaccatatccacaagcatagtccaatgcaacttgtaaaccaatttgtgatgcacttggacttgcaacacac |
39967764 |
T |
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| Q |
306 |
caacttgaacctgaggggattggaaaagaattcactgtggttggattggtatatggaagtgttgaagttggagaaactgtgtctggattggaattaggat |
405 |
Q |
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| T |
39967763 |
caacttgaacctgaggagattggaaaagaattcactgtggttggattggtatatggaagtgttgaagttggagaaactgtgtctggattggaattaggat |
39967664 |
T |
|
| Q |
406 |
tgagaaatggatcaggtgttgtaattgttggaatggtagtaattggagtggtaatatccttttggacagtagaaattgtgtgagtaataaattcttgttt |
505 |
Q |
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| T |
39967663 |
tgagaaatggatcaggtgttgtaattgttggaatggtagtaattggagtggtaatatccttttggacagtagaaattgtgtgagtaataaattcttgttt |
39967564 |
T |
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| Q |
506 |
cacttcatgtctttttagtacattaacttgtctttgtgctt |
546 |
Q |
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| T |
39967563 |
cacttcatgtctttttagtacattaacttctctttgtgctt |
39967523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 67 - 319
Target Start/End: Complemental strand, 16120995 - 16120743
Alignment:
| Q |
67 |
aagccttacttggattagtgctagtgataacagcagttccgccaaaattgcagctatttggaacaggattcttatgataatacttattaaaggcgtaaga |
166 |
Q |
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| T |
16120995 |
aagccttacttggatttgtgttagtgaggacagcatttccaccaaaattgcaactatttggaacaggattcttttgatagtacttattaaaggcaaaaga |
16120896 |
T |
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| Q |
167 |
agcaagatgatgaatagaatttggattgtaacagcttccaccaggttgaattgctgaacaatcagtgccaccatatccacaagcatagtccaatgcaact |
266 |
Q |
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| T |
16120895 |
agcatgatcatgaacagaattagggttataacagcttccaccaggttgaattgcagaacaatcagtaccaccatatccacaagcataatccaatgcaact |
16120796 |
T |
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| Q |
267 |
tgtaaaccaatttgtgatgcacttggacttgcaacacaccaacttgaacctga |
319 |
Q |
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| T |
16120795 |
tgtaaagatctttgtgaagcactagggcttgcaatgcaccaacttgcacctga |
16120743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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