View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16362_low_7 (Length: 296)
Name: NF16362_low_7
Description: NF16362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16362_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 6116928 - 6117190
Alignment:
| Q |
18 |
aaaatgtatagtggactagttgttcaaattgaggtcatgtcttattttctctcgccagttgtgtttcaaacttgttaagcattatggtgtttttggaaaa |
117 |
Q |
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| T |
6116928 |
aaaatgtatagtggact-----ttcaaattgaggtcatgtcttattttctctcgccagttgtgtttcaaacttgttaagcattatggtgtttttggaaaa |
6117022 |
T |
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| Q |
118 |
acatcagattctcatgatctaagatagtcttagcagaagatccagatcattcatttgaaaagaatgtatgtttatcaatgaaaatatattctacgttttg |
217 |
Q |
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| T |
6117023 |
gcatcagattctcatgatctaagatagtcttagcagaagatccagatcattcatttgaaaagaatgtatgtttatcaatgaaaatatattctacgttgtg |
6117122 |
T |
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| Q |
218 |
taggaattacggtgtgtttatcaatgattttgtcaacataataattctgattaatttatttgatgatg |
285 |
Q |
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| T |
6117123 |
taggaattacggtgtgtttatcaatgattttgtgaacataataattctgattaatttttttgatgatg |
6117190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 6122404 - 6122313
Alignment:
| Q |
108 |
ttttggaaaaacatcagattctcatgatctaagatagtcttagcagaagatccagatcattcatttgaaaagaatgta-tgtttatcaatga |
198 |
Q |
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| T |
6122404 |
ttttgcaaaaacatcagattttcatgatgtaggatagtcttatcataaaatccagatcattcatacgagaagaatgtattttttatcaatga |
6122313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 13752902 - 13752957
Alignment:
| Q |
172 |
ttgaaaagaatgtatgtttatcaatgaaaatatattctacgttttgtaggaattac |
227 |
Q |
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| T |
13752902 |
ttgaaaaaaatgtatgtttatcaatcaaaatacattcaaccttttgtaggaattac |
13752957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 13752825 - 13752872
Alignment:
| Q |
85 |
aaacttgttaagcattatggtgtttttggaaaaacatcagattctcat |
132 |
Q |
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| T |
13752825 |
aaacatgttaagctttatggtgtttttgcaaaaacatcagattttcat |
13752872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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