View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16362_low_8 (Length: 282)
Name: NF16362_low_8
Description: NF16362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16362_low_8 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 45845629 - 45845879
Alignment:
| Q |
12 |
atgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaactta |
111 |
Q |
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| T |
45845629 |
atgaagctacaagtgagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaactta |
45845728 |
T |
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| Q |
112 |
ttgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagat |
211 |
Q |
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| T |
45845729 |
ttgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaaaat |
45845828 |
T |
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| Q |
212 |
catgatttcataccaccaccattcaaggcaaacagaaagacaacttggtac |
262 |
Q |
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| T |
45845829 |
catgatttcataccaccaccattcaaggcaaacagaaagacaacttggtac |
45845879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 2990611 - 2990387
Alignment:
| Q |
25 |
agagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgatggaaa |
124 |
Q |
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| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaa |
2990512 |
T |
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| Q |
125 |
aatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagatcatgatttcatac |
224 |
Q |
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| T |
2990511 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
2990412 |
T |
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| Q |
225 |
caccaccattcaaggcaaacagaaa |
249 |
Q |
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| T |
2990411 |
caccaccattcgagacaaaccgaaa |
2990387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 28505699 - 28505852
Alignment:
| Q |
96 |
gaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaaca |
195 |
Q |
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| T |
28505699 |
gaaacaccaagactaagtgatgatggaaaaacataaaccaaagatgttgtttgaataagtattcccattgaagcaattgttgcttttggattaaccaaaa |
28505798 |
T |
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| Q |
196 |
aaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
249 |
Q |
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| T |
28505799 |
gtccacacatcattatcatgaactcataccaccaccattcgagacaaaccgaaa |
28505852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 24488 - 24396
Alignment:
| Q |
12 |
atgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacacta |
104 |
Q |
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| T |
24488 |
atgaagctgaaagaaagtcctgaaattgctgaaagttttgcttttgatggcttttgtgcacctatcatgttaccaactcttgttgaaacacta |
24396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 51875145 - 51874980
Alignment:
| Q |
84 |
ccaactctagtggaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttg |
183 |
Q |
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| T |
51875145 |
ccaactctagttgaaacaccaaaactaagagaagatggaaaaacataaaccaaagaagttgtttgaataagaatacccattgaagaaatggttgactttg |
51875046 |
T |
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| Q |
184 |
gatttatcaacaaaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
249 |
Q |
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| T |
51875045 |
ggttgaccaaaagtccacacaaaattatcatgagttcataccaccaccattctaaacaaacagaaa |
51874980 |
T |
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