View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16363_high_1 (Length: 566)
Name: NF16363_high_1
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16363_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 34795530 - 34796080
Alignment:
| Q |
1 |
tgaagcttcttggagaaggcaagtgaagtgagcccaagacccaaagcacaagcacccttaagttgaattccttgcttggaaagcacacaatgacgtggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34795530 |
tgaagcttcttggagaaggcaagtgaagtgagcccaagacccaaagcacaagcacccttaagttgaattccttgcttggaaagcacacaattacgtggtt |
34795629 |
T |
|
| Q |
101 |
tgaagaggaagtagaaaacacacccagatgtaaatagcagatgaagcaagttattcttaaatcccaaacctaactcctaaatcaaagcatatccatcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34795630 |
tgaagaggaagtagaaaacacacccagatgtaaatagcagatgaagcaagttattcttaaatcccaaacccaactcctaaatcaaagcatatccatcaca |
34795729 |
T |
|
| Q |
201 |
tgcacacgtacaaactcatcccatttataatctcattcgcaaccgttctgttttgtgttttgttccatttctatacagtaaacacaacaattacacgtag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34795730 |
tgcacacgtacaaactcatcccatttataatctcattcgcaaccgttctgttttgtgttttgttccatttctatacagtaaacacaacaattacacgtag |
34795829 |
T |
|
| Q |
301 |
aaacacaaaacatgtcggactggggaccagtgtttgtttcaatagtgctgtttgttttgttgacgccaggattattgtttcaaatacctggacggtcaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34795830 |
aaacacaaaacatgtcggactggggaccagtgtttgtttcaatagtgctgtttgttttgttgacgccaggattattgtttcaaatacctggacggtcaag |
34795929 |
T |
|
| Q |
401 |
atgtgtggagtttggaaactttcagacaagtggtgcttcaatactcattcactcccttctctattttggtttcgtttgcattttcttccttgcaattaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795930 |
atgtgtggagtttggaaactttcagacaagtggtgcttcaatactcattcactcccttctctattttggtttcgtttgcattttcttccttgcaattaag |
34796029 |
T |
|
| Q |
501 |
attcacttatacatcggctaaaaattcttaattcactcatcatgtttctgc |
551 |
Q |
| |
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|
| T |
34796030 |
attcacttatacatcggctaaaaattcttaattcactcatcatgtttctgc |
34796080 |
T |
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