View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16363_high_5 (Length: 374)

Name: NF16363_high_5
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16363_high_5
NF16363_high_5
[»] chr6 (1 HSPs)
chr6 (98-279)||(14544544-14544725)
[»] chr4 (2 HSPs)
chr4 (98-279)||(508058-508239)
chr4 (191-279)||(8241313-8241401)
[»] chr7 (2 HSPs)
chr7 (98-279)||(6931994-6932175)
chr7 (108-163)||(29732506-29732561)
[»] chr5 (1 HSPs)
chr5 (101-279)||(26290671-26290849)
[»] chr3 (1 HSPs)
chr3 (98-253)||(9292837-9292991)
[»] chr1 (2 HSPs)
chr1 (11-97)||(40034232-40034318)
chr1 (277-357)||(40034100-40034180)
[»] scaffold0002 (1 HSPs)
scaffold0002 (98-270)||(169538-169710)
[»] chr2 (2 HSPs)
chr2 (33-82)||(34691511-34691559)
chr2 (33-82)||(34713923-34713971)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 14544544 - 14544725
Alignment:
Q  98 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14544544 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 14544643  T
Q  198 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14544644 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 14544725  T

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Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 508058 - 508239
Alignment:
Q  98 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  508058 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 508157  T
Q  198 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  508158 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 508239  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 8241401 - 8241313
Alignment:
Q  191 actcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 279  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8241401 actcctattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 8241313  T

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Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 6931994 - 6932175
Alignment:
Q  98 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6931994 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 6932093  T
Q  198 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6932094 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcacatttgctgtgatgttcatgaatagt 6932175  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 29732506 - 29732561
Alignment:
Q  108 agtattacttaccaaccctattttttctgctttttcgttgggactggttcttgttt 163  Q
    ||||||||||||||| || | ||||||| |||||||||||||| ||||||||||||    
T  29732506 agtattacttaccaatccaaatttttcttctttttcgttgggaatggttcttgttt 29732561  T

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Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 101 - 279
Target Start/End: Original strand, 26290671 - 26290849
Alignment:
Q  101 taggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactcccattt 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26290671 taggagtagtattacttaccaactctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactcccattt 26290770  T
Q  201 tgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26290771 tgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 26290849  T

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Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 9292991 - 9292837
Alignment:
Q  98 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292991 gtctaggagtagtattacttaccaaccctattttttctgctttt-cgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 9292893  T
Q  198 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292892 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatca 9292837  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 40034318 - 40034232
Alignment:
Q  11 catcatcacccattagtccttgaacttgaaatcacaaacagaatctgtccattcaacacagaagacaagacattataactactatat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40034318 catcatcacccattagtccttgaacttgaaatcacaaacagaatctgtccattcaacacagaaaacaagacattataactactatat 40034232  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 40034180 - 40034100
Alignment:
Q  277 agtattcattcaatagtaaaataaaatacttatatagcaacagcaaaataacattcccacacatcaaaaattgcataatga 357  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||||||||||    
T  40034180 agtattcattcaatagtaaaataaaatacttatatagcaacaacacaataacattcccacaagtcaaaaattgcataatga 40034100  T

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Target: scaffold0002 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 169538 - 169710
Alignment:
Q  98 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 197  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||| ||||| | ||||||||||||||||||||||| ||| |||||| ||| ||| |    
T  169538 gtctaggagtagtattacttaccaaccccatttattctgccttttcgctgggattagttcttgtttgtatatccttattctattttttattaaattccta 169637  T
Q  198 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttc 270  Q
     ||||||||||   |||| || |||||||| |||||||| || ||  | || |||||||| ||||| ||||||    
T  169638 ctttgtagctgtcgcacaacttcttatttatgtgggagccataaatgtcttgatcatattcgctgtaatgttc 169710  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 34691511 - 34691559
Alignment:
Q  33 aacttgaaatcacaaacagaatctgtccattcaacacagaagacaagaca 82  Q
    ||||||||||| |||||||| |||||| ||||||||||||| ||||||||    
T  34691511 aacttgaaatctcaaacaga-tctgtcaattcaacacagaaaacaagaca 34691559  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 34713923 - 34713971
Alignment:
Q  33 aacttgaaatcacaaacagaatctgtccattcaacacagaagacaagaca 82  Q
    ||||||||||| |||||||| |||||| ||||||||||||| ||||||||    
T  34713923 aacttgaaatctcaaacaga-tctgtcaattcaacacagaaaacaagaca 34713971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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