View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16363_high_6 (Length: 358)
Name: NF16363_high_6
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16363_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 17440481 - 17440147
Alignment:
| Q |
9 |
gagatgaaaaaccagtttcagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaannnnnnngaatcaag |
108 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17440481 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaatttttttgaatcaag |
17440382 |
T |
|
| Q |
109 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17440381 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
17440282 |
T |
|
| Q |
209 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17440281 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
17440182 |
T |
|
| Q |
309 |
tcaagatttatgcagaatcctaccaagacacattt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
17440181 |
tcaagatttatgcagaatcctaccaagacacattt |
17440147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 4876362 - 4876696
Alignment:
| Q |
9 |
gagatgaaaaaccagtttcagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaannnnnnngaatcaag |
108 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4876362 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaatttttttgaatcaag |
4876461 |
T |
|
| Q |
109 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4876462 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
4876561 |
T |
|
| Q |
209 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
308 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4876562 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
4876661 |
T |
|
| Q |
309 |
tcaagatttatgcagaatcctaccaagacacattt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
4876662 |
tcaagatttatgcagaatcctaccaagacacattt |
4876696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 30188979 - 30189313
Alignment:
| Q |
9 |
gagatgaaaaaccagtttcagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaannnnnnngaatcaag |
108 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |
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| T |
30188979 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttcttggcttggaagtgcatcaatctgagagtggaatttttttgaatcaag |
30189078 |
T |
|
| Q |
109 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
208 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189079 |
agaagaatgctcatgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
30189178 |
T |
|
| Q |
209 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189179 |
agctgaaaaaattgatgcttctcattatagaagtttgattggaagtctactttatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
30189278 |
T |
|
| Q |
309 |
tcaagatttatgcagaatcctaccaagacacattt |
343 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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| T |
30189279 |
tcaagatttatgcagagtcctaccaagacacattt |
30189313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 3061719 - 3062053
Alignment:
| Q |
9 |
gagatgaaaaaccagtttcagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaannnnnnngaatcaag |
108 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3061719 |
gagatgaaaaaccagtttgagatgtctagcttaggggaaatgaactattttctcggcttggaagtgcatcaatctgagaatggaatttttttgaatcaag |
3061818 |
T |
|
| Q |
109 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3061819 |
agaagtatgctcgtgaagttttgaagaagtttaaaatggaaagctgcaaatctgctccaactcctttggtgtggaatttgaaactctcaaaggaagatga |
3061918 |
T |
|
| Q |
209 |
agctgaaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactc |
308 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3061919 |
agctggaaaaattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcatcaagcttactc |
3062018 |
T |
|
| Q |
309 |
tcaagatttatgcagaatcctaccaagacacattt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
3062019 |
tcaagatttatgcagaatcctaccaagacacattt |
3062053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 218 - 343
Target Start/End: Complemental strand, 26083769 - 26083644
Alignment:
| Q |
218 |
aattgatgcttctcgttatagaagtttgattgggagtctactctatcttacttcatctagacctgatcttatgtatgcagcaagcttactctcaagattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26083769 |
aattgatgcttctcgttatagaagtttgattgtaagtctactttatcttacttcatcttgacctgatcttatgtatgcagcaagcttactctcaagattt |
26083670 |
T |
|
| Q |
318 |
atgcagaatcctaccaagacacattt |
343 |
Q |
| |
|
||||||| |||||||||||||||||| |
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|
| T |
26083669 |
atgcagagtcctaccaagacacattt |
26083644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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