View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16363_low_11 (Length: 288)
Name: NF16363_low_11
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16363_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 43531579 - 43531307
Alignment:
| Q |
1 |
gctaatggttccaattccacttgatgaagaagtgaagtctaaggttcgttcacgtaaaagacagtggggagcaagttggattgaacaatttttaatattg |
100 |
Q |
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| T |
43531579 |
gctaatggttccaattccacttgatgaagaagtgaagtctaaggttcgttcacgtaaaagacaatggggagcaagttggattgaacaatttttaatattg |
43531480 |
T |
|
| Q |
101 |
ttttccagaggattcaaagaacggagacatgactattttagctggttgagaatcacacaagttctttccactgctgtcatccttggattactatggtggc |
200 |
Q |
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| T |
43531479 |
ttttccagaggattcaaagaacggagacatgactattttagctggttgagaatcacacaagttctttccactgctgtcatccttggattactatggtggc |
43531380 |
T |
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| Q |
201 |
aatcagatgctagcaacccaaagggtcttcaagatcaggtaagtggttaatgcatttcagctaagatcaaatt |
273 |
Q |
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| T |
43531379 |
aatcagatgctagcaacccaaagggtcttcaagatcaggtaagtggttaatgcatttcagctaagatcgaatt |
43531307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 24128170 - 24128357
Alignment:
| Q |
55 |
taaaagacagtggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatc |
154 |
Q |
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| T |
24128170 |
taaaagacaatggggagcaagatgggatgaacaattttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatc |
24128269 |
T |
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| Q |
155 |
acacaagttctttccactgctgtcatccttggattactatggtggcaatcagatgctagcaacccaaagggtcttcaagatcaggtaa |
242 |
Q |
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| T |
24128270 |
acacaagttttatccactgcaatcatcttaggattactctggtggcaatccgatgctaagaacccaaaagatctgcaagatcaggtaa |
24128357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 24145936 - 24146122
Alignment:
| Q |
56 |
aaaagacagtggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatca |
155 |
Q |
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|||||||| ||||||||||||||| ||||||||||| ||| | |||| ||||||| |||| ||| ||| |||||||| ||||||||||| ||||||| |
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| T |
24145936 |
aaaagacaatggggagcaagttgggatgaacaattttccatacttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatca |
24146035 |
T |
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| Q |
156 |
cacaagttctttccactgctgtcatccttggattactatggtggcaatcagatgctagcaacccaaagggtcttcaagatcaggtaa |
242 |
Q |
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| T |
24146036 |
cacaagttttatccactgcaatcatcttaggatcactctggtggcaatcagatgctgaaaacccaaaagatctgcaagatcaggtaa |
24146122 |
T |
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