View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16363_low_12 (Length: 288)

Name: NF16363_low_12
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16363_low_12
NF16363_low_12
[»] chr6 (8 HSPs)
chr6 (43-280)||(20770444-20770681)
chr6 (105-235)||(6947964-6948094)
chr6 (102-175)||(6921494-6921567)
chr6 (101-175)||(6954663-6954737)
chr6 (102-175)||(6943098-6943171)
chr6 (249-288)||(6921381-6921420)
chr6 (249-288)||(6954550-6954589)
chr6 (248-288)||(6942998-6943038)
[»] chr4 (6 HSPs)
chr4 (174-288)||(53774765-53774879)
chr4 (211-288)||(11971013-11971090)
chr4 (211-288)||(11981714-11981791)
chr4 (247-282)||(10468040-10468075)
chr4 (247-282)||(10482179-10482214)
chr4 (249-281)||(10475207-10475239)
[»] chr5 (1 HSPs)
chr5 (48-288)||(18964861-18965104)
[»] chr7 (7 HSPs)
chr7 (23-172)||(14076469-14076618)
chr7 (23-172)||(14386497-14386646)
chr7 (249-288)||(14076678-14076717)
chr7 (249-288)||(14386706-14386745)
chr7 (249-280)||(22063642-22063673)
chr7 (249-282)||(19637254-19637287)
chr7 (248-288)||(13416942-13416982)
[»] chr2 (2 HSPs)
chr2 (249-288)||(20975558-20975597)
chr2 (102-162)||(20712690-20712750)
[»] scaffold0097 (1 HSPs)
scaffold0097 (102-162)||(16529-16589)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 43 - 280
Target Start/End: Original strand, 20770444 - 20770681
Alignment:
Q  43 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttgatttggcgaaagagacatac 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20770444 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagcaatttgtgatcatctcccttgatttggcgaaagagacatac 20770543  T
Q  143 aaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactcttcgtgtgttgatggattgtatttgtttttctcatgatgttnnnn 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        
T  20770544 aaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactctttgtgtgttgatggattgtatttgtttttctcatgatgttaaaa 20770643  T
Q  243 nnnnttattttgttatatggcaaatgaaggaatttgga 280  Q
        ||||||||||||||||||||||||||||||||||    
T  20770644 aaacttattttgttatatggcaaatgaaggaatttgga 20770681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 6948094 - 6947964
Alignment:
Q  105 ttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactcttcgtgt 204  Q
    ||||||| ||||| |||||||||| || ||||| ||| | || |||||| ||||||| |||||||||||||   | || ||||  || |||||||  |||    
T  6948094 ttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatgaagagctacatgatgttccaactctttctgt 6947995  T
Q  205 gttgatggattgtatttgtttttctcatgat 235  Q
    ||||||||||||  |||||||||| ||||||    
T  6947994 gttgatggattgcctttgtttttcacatgat 6947964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 6921567 - 6921494
Alignment:
Q  102 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 175  Q
    |||||||||| ||||| |||||||||| || ||||||||| | ||| ||||| ||||||| |||||||||||||    
T  6921567 aatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaa 6921494  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 6954737 - 6954663
Alignment:
Q  101 aaatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 175  Q
    ||||||||||||||||| |||||| ||  || ||||||||| | ||||||||| ||||| | |||||||||||||    
T  6954737 aaatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatgaa 6954663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 6943171 - 6943098
Alignment:
Q  102 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 175  Q
    |||| ||||| ||||| |||||||||| || ||||||||| | | | ||||| |||||||||||||||||||||    
T  6943171 aattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctcaatgttgtgatgaa 6943098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 6921420 - 6921381
Alignment:
Q  249 attttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaaga 6921381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 6954589 - 6954550
Alignment:
Q  249 attttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  6954589 attttgttatttggcaaatgaaggaatttggagttgaaga 6954550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 6943038 - 6942998
Alignment:
Q  248 tattttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    ||||||||||| | ||||||||||||||||||||| |||||    
T  6943038 tattttgttatttagcaaatgaaggaatttggagttgaaga 6942998  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 53774765 - 53774879
Alignment:
Q  174 aatttccacttgataatcaaactcttcgtgtgttgatggattgtatttgtttttctcatgatgttnnnnnnnnttattttgttatatggcaaatgaagga 273  Q
    |||| ||| ||||||||| || | || ||| ||||||||||||||||||||||||| ||||| ||        | |||||||||||||||||||||||||    
T  53774765 aattgccatttgataatccaaatatttgtgcgttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaagga 53774864  T
Q  274 atttggagtcgaaga 288  Q
    ||||||||| |||||    
T  53774865 atttggagttgaaga 53774879  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 11971090 - 11971013
Alignment:
Q  211 ggattgtatttgtttttctcatgatgttnnnnnnnnttattttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    ||||||| ||||||||||||||||| ||        | |||||||||||||||||||||||||||||||||| |||||    
T  11971090 ggattgtctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagtggaaga 11971013  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 11981791 - 11981714
Alignment:
Q  211 ggattgtatttgtttttctcatgatgttnnnnnnnnttattttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    ||||||| ||||||||||||||||| ||        | |||||||||||||||||||||||||||||||||| |||||    
T  11981791 ggattgtctttgtttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatttggagtggaaga 11981714  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 10468040 - 10468075
Alignment:
Q  247 ttattttgttatatggcaaatgaaggaatttggagt 282  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10468040 ttattttgttatatggcaaatgaaggattttggagt 10468075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 10482179 - 10482214
Alignment:
Q  247 ttattttgttatatggcaaatgaaggaatttggagt 282  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10482179 ttattttgttatatggcaaatgaaggattttggagt 10482214  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 10475207 - 10475239
Alignment:
Q  249 attttgttatatggcaaatgaaggaatttggag 281  Q
    ||||||||||||||||||||||||| |||||||    
T  10475207 attttgttatatggcaaatgaaggattttggag 10475239  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 288
Target Start/End: Complemental strand, 18965104 - 18964861
Alignment:
Q  48 gttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttgatttggcgaaagagacatacaaaca 147  Q
    ||||||||||| |||| ||||||||||||| ||| || | ||||   ||  || |||||||||| ||||| |||||| ||| ||  |||||||  | |||    
T  18965104 gttggttggtccgtcaccgttataattgtcatcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacaca 18965005  T
Q  148 gttgttactccctcaatgttgtgatgaatt---tccacttgataatcaaactcttcgtgtgttgatggattgtatttgtttttctcatgatgttnnnnnn 244  Q
    |||||||||||||| |||||||||||| ||    || ||||||| ||  || ||| |||| |||||| ||||  |||||||| |||||||| ||          
T  18965004 gttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttgtgtattgatgaattgcctttgttttactcatgatcttgaaaaa 18964905  T
Q  245 nnttattttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
      | ||||  |||||||||||||||||||||||||||| |||||    
T  18964904 actcatttcattatatggcaaatgaaggaatttggagttgaaga 18964861  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 14076469 - 14076618
Alignment:
Q  23 ggtgtatatttaagtaatagtatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttg 122  Q
    ||||| ||||| ||||||||| |  ||||||||||| |||| |||||||  |||| |  ||||||||| |  ||  || |||||||||| ||||| ||||    
T  14076469 ggtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttg 14076568  T
Q  123 atttggcgaaagagacatacaaacagttgttactccctcaatgttgtgat 172  Q
    |||||| ||  |||||||| | ||| ||||||||||||| ||||||||||    
T  14076569 atttggggactgagacatatacacaattgttactccctccatgttgtgat 14076618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 14386497 - 14386646
Alignment:
Q  23 ggtgtatatttaagtaatagtatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttg 122  Q
    ||||| ||||| ||||||||| |  ||||||||||| |||| |||||||  |||| |  ||||||||| |  ||  || |||||||||| ||||| ||||    
T  14386497 ggtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttg 14386596  T
Q  123 atttggcgaaagagacatacaaacagttgttactccctcaatgttgtgat 172  Q
    |||||| ||  |||||||| | ||| ||||||||||||| ||||||||||    
T  14386597 atttggggactgagacatatacacaattgttactccctccatgttgtgat 14386646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 14076678 - 14076717
Alignment:
Q  249 attttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaaga 14076717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 14386706 - 14386745
Alignment:
Q  249 attttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaaga 14386745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 280
Target Start/End: Original strand, 22063642 - 22063673
Alignment:
Q  249 attttgttatatggcaaatgaaggaatttgga 280  Q
    ||||||||||||||||||||||||||||||||    
T  22063642 attttgttatatggcaaatgaaggaatttgga 22063673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 19637287 - 19637254
Alignment:
Q  249 attttgttatatggcaaatgaaggaatttggagt 282  Q
    ||||| ||||||||||||||||||||||||||||    
T  19637287 attttattatatggcaaatgaaggaatttggagt 19637254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 13416982 - 13416942
Alignment:
Q  248 tattttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    |||||| | |||||||||||||||||||||||||| |||||    
T  13416982 tattttatcatatggcaaatgaaggaatttggagttgaaga 13416942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 20975558 - 20975597
Alignment:
Q  249 attttgttatatggcaaatgaaggaatttggagtcgaaga 288  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  20975558 attttgttatatggcaaatgagggaatttggagttgaaga 20975597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 20712750 - 20712690
Alignment:
Q  102 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctca 162  Q
    ||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| ||||||||    
T  20712750 aatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctca 20712690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 16589 - 16529
Alignment:
Q  102 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctca 162  Q
    ||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| ||||||||    
T  16589 aatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctca 16529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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