View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16363_low_13 (Length: 272)
Name: NF16363_low_13
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16363_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 20998004 - 20997957
Alignment:
| Q |
216 |
caaatttgttatacagagttggtaccattgttgaagaagttcatctca |
263 |
Q |
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| T |
20998004 |
caaatttgttatacagagttggtaccattgttgaagaagttcatctca |
20997957 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 20998487 - 20998443
Alignment:
| Q |
75 |
atctttgttcatcattctccacttatccatcttattttcaccaca |
119 |
Q |
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| T |
20998487 |
atctttgttcatcattctccacttctccatcttattttcaccaca |
20998443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 9100143 - 9100187
Alignment:
| Q |
75 |
atctttgttcatcattctccacttatccatcttattttcaccaca |
119 |
Q |
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| T |
9100143 |
atctttgttcatcactctacacttcttcatcttattttcaccaca |
9100187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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