View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16363_low_2 (Length: 502)

Name: NF16363_low_2
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16363_low_2
NF16363_low_2
[»] chr4 (3 HSPs)
chr4 (216-314)||(47957038-47957136)
chr4 (410-480)||(47957232-47957302)
chr4 (1-85)||(47956823-47956907)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 47957038 - 47957136
Alignment:
Q  216 gcaaaagttatatcaatatggtaacgtttttgtattgaaattgcccctcattttacaagaagtgtacaaatacggttgttttcaaacacaatttgaaag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47957038 gcaaaagttatatcaatatggtaacgtttttgtattgaaattgcccctcattttacaagaagtgtacaaatacggttgttttcaaacacaatttgaaag 47957136  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 47957232 - 47957302
Alignment:
Q  410 gtacgagtctggtttgcagatacgagacccttgtgagagaatctaaaggtccgaacaattgctgcactgca 480  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47957232 gtacgagtctcgtttgcagatacgagacccttgtgagagaatctaaaggtccgaacaattgctgcactgca 47957302  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 47956823 - 47956907
Alignment:
Q  1 atgaaatatcctacccagtacccacgacccccaccttcttgtctgggtctaaagtttgtctgccccttttgcaacaacaattgaa 85  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||    
T  47956823 atgaaatatcctacacagtacccacgacccccaccttcttgtctaggtctaaagtttgtccgtcccttttgaaacaacaattgaa 47956907  T

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