View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16363_low_8 (Length: 334)
Name: NF16363_low_8
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16363_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 149 - 318
Target Start/End: Complemental strand, 55170273 - 55170104
Alignment:
| Q |
149 |
ttaacagacaatcggtcataattagaattagaaattaggaaacaaaaggaaaaggtagtaagtataactgtgagacaggttgatatagatctgtacgtat |
248 |
Q |
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| T |
55170273 |
ttaacagacaatctgtcataattagaattagaaattaggaaacaaaaggaaaaggtagtaagtataactgtgagacaggttgatatagatctgtacgtat |
55170174 |
T |
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| Q |
249 |
ctaaagttggtgtttgtcaatgacaacataataatgttaccaaactccatcaaatgatagccttcattat |
318 |
Q |
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| T |
55170173 |
ctaaagttggtgtttgtcaatgacaaaacaataatgttaccaaactccatcaaatgatagccttcattat |
55170104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 55170490 - 55170346
Alignment:
| Q |
1 |
aaagaaaatcaagtgcataagaagnnnnnnnctggattcgaatca--atgtaaacacggcaatcatagattgtcacagttgtaacctttttgtacttaa- |
97 |
Q |
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| T |
55170490 |
aaagaaaatcaagtgcataagaagaaaaaaactggattcgaatcacaatgtaaacacggcaatcatagattgtcccagttgtaacctttttgtacttaaa |
55170391 |
T |
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| Q |
98 |
-aaaatactatccaaaattatgaatatttgtttgtaaggaccatt |
141 |
Q |
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| T |
55170390 |
aaaaatactatccaaaattctgaatatttgtttgtaaggaccatt |
55170346 |
T |
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