View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16363_low_9 (Length: 328)

Name: NF16363_low_9
Description: NF16363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16363_low_9
NF16363_low_9
[»] chr4 (34 HSPs)
chr4 (18-320)||(7907875-7908177)
chr4 (32-313)||(7877277-7877555)
chr4 (27-313)||(7774067-7774350)
chr4 (27-253)||(7771021-7771241)
chr4 (27-253)||(7789706-7789926)
chr4 (67-291)||(7904611-7904832)
chr4 (154-282)||(45372419-45372547)
chr4 (146-253)||(7822586-7822693)
chr4 (146-253)||(7800254-7800361)
chr4 (146-253)||(7813097-7813204)
chr4 (141-289)||(45366567-45366718)
chr4 (153-254)||(48156788-48156889)
chr4 (146-253)||(7238074-7238181)
chr4 (153-253)||(49044590-49044690)
chr4 (153-247)||(48891032-48891126)
chr4 (153-251)||(49041499-49041597)
chr4 (160-313)||(48870099-48870252)
chr4 (160-313)||(48885785-48885938)
chr4 (157-245)||(48898347-48898438)
chr4 (170-253)||(49048977-49049060)
chr4 (154-282)||(48862829-48862960)
chr4 (141-217)||(7765274-7765350)
chr4 (163-307)||(45385158-45385302)
chr4 (188-300)||(48902520-48902632)
chr4 (153-247)||(48170947-48171044)
chr4 (153-298)||(48735673-48735821)
chr4 (153-218)||(50251169-50251234)
chr4 (154-218)||(37827356-37827420)
chr4 (153-291)||(47207513-47207651)
chr4 (141-245)||(48148031-48148138)
chr4 (157-218)||(48875498-48875559)
chr4 (155-218)||(7786095-7786158)
chr4 (154-253)||(50668660-50668759)
chr4 (159-248)||(33134190-33134282)
[»] chr8 (6 HSPs)
chr8 (169-263)||(12199914-12200008)
chr8 (169-263)||(12444342-12444436)
chr8 (153-253)||(15348479-15348579)
chr8 (165-263)||(12194908-12195006)
chr8 (165-263)||(12439336-12439434)
chr8 (150-244)||(4032274-4032368)
[»] chr1 (4 HSPs)
chr1 (141-248)||(24309799-24309906)
chr1 (141-253)||(24340031-24340143)
chr1 (161-253)||(24322079-24322171)
chr1 (160-230)||(24366795-24366865)
[»] chr3 (4 HSPs)
chr3 (153-279)||(47452268-47452394)
chr3 (162-253)||(11006332-11006423)
chr3 (60-253)||(11024808-11024998)
chr3 (76-253)||(11015812-11015986)
[»] scaffold0508 (1 HSPs)
scaffold0508 (141-230)||(11902-11991)
[»] chr5 (4 HSPs)
chr5 (153-248)||(29712830-29712925)
chr5 (153-245)||(29687676-29687768)
chr5 (154-218)||(1812077-1812141)
chr5 (153-218)||(29695804-29695869)
[»] chr6 (2 HSPs)
chr6 (162-242)||(21980014-21980094)
chr6 (162-253)||(21015393-21015484)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 7908177 - 7907875
Alignment:
Q  18 agatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgat 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908177 agatcgggtaagcgaaaaagtaatgttgagtgaagcaggatcatcatcgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgat 7908078  T
Q  118 ataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7908077 ataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaa 7907978  T
Q  218 cagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtgtcgtcgtcttcttcttctt 317  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7907977 cagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgaggaagatacggcagtgtcgtcgtcttcttcttctt 7907878  T
Q  318 ctc 320  Q
    |||    
T  7907877 ctc 7907875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 32 - 313
Target Start/End: Complemental strand, 7877555 - 7877277
Alignment:
Q  32 aaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattct 131  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||| |||| |||| |||||| ||||||||||||||| ||||||  ||||||||||    
T  7877555 aaaaattaatgttcagtgaagcaggatcatcatcgttaagaaatgcttcaaaacctattgatcgaatttcatgagatagaggtgatatgcacataattct 7877456  T
Q  132 agaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgt 231  Q
    || ||    |||  |||  | ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||   | |||||||||    
T  7877455 aggagt---gtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgt 7877359  T
Q  232 gcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtgtcgtcgtcttcttct 313  Q
      ||||||||||||| ||||||| |  ||||| |||| ||||||||||||| ||||||||||| ||||| || |||||||||    
T  7877358 ataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatacggccgtgtcttcttcttcttct 7877277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 7774067 - 7774350
Alignment:
Q  27 aagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacata 126  Q
    |||| ||||| ||| ||| | |||||||| ||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||  |||||    
T  7774067 aagcgaaaaattaaggttcactgaagcagtatcatcatcgttaagaaatgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacata 7774166  T
Q  127 attctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttga 226  Q
    ||||||| ||    |||  |||  | ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| | ||||    
T  7774167 attctaggagt---gtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttga 7774263  T
Q  227 aacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtgtcgtcgtcttcttct 313  Q
    || |   ||||||||||||||||| || ||  | ||| || | ||||||||||||| ||||||||||||||||| ||  ||||||||    
T  7774264 aatgaataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgaggaagatacggcagtgtcttctgcttcttct 7774350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 7771241 - 7771021
Alignment:
Q  27 aagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacata 126  Q
    |||| ||||| ||| ||| | |||||||||||||||   |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||  | | |    
T  7771241 aagcgaaaaattaaggttcactgaagcaggatcatc---gttaagaaatgcttcaaaatctatagatcgaatttcatgagattgagttgatatgcataaa 7771145  T
Q  127 attctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttga 226  Q
    | |||| |||    |||| ||||||||| ||||||||||||||||||| |||| || ||| ||||||||||||||||||| |||||||||||  | ||||    
T  7771144 aatctacaagt---gtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttga 7771048  T
Q  227 aacgtgcaagagacttcaccggcaacc 253  Q
    ||| |  ||||||||||||||||||||    
T  7771047 aacatataagagacttcaccggcaacc 7771021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 7789926 - 7789706
Alignment:
Q  27 aagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacata 126  Q
    |||| ||||| ||| ||| | |||||||||||||||   |||||||||||||| |||||||||||||| | ||||||||||| ||||||||||| | | |    
T  7789926 aagcgaaaaattaaggttcactgaagcaggatcatc---gttaagaaatgcttcaaaatctatagatcaaatttcatgagattgagttgatatacataaa 7789830  T
Q  127 attctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttga 226  Q
    | |||| |||    |||| |||| |||| ||||||||||||||||||| |||| || ||| | ||||||| ||||||||| |||||||||||  | ||||    
T  7789829 aatctacaagt---gtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttga 7789733  T
Q  227 aacgtgcaagagacttcaccggcaacc 253  Q
    ||| |  ||||||||||||||||||||    
T  7789732 aacatataagagacttcaccggcaacc 7789706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 291
Target Start/End: Complemental strand, 7904832 - 7904611
Alignment:
Q  67 ttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttt--tgcagaggtaagttgaaa 164  Q
    ||||||||||||| ||||| || |||| || ||||||||||||||  ||||||  |||||||||||| ||     ||||   ||| | ||| ||||||||    
T  7904832 ttaagaaatgcttcaaaatataaagattgaatttcatgagatagatatgatatgcacataattctaggag-----tgttagctgcggcggtgagttgaaa 7904738  T
Q  165 atgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatc 264  Q
    ||||||||||||||| || ||| |||||||||||||||||||| ||||||||||| | |||||||||  |||||||||||| ||||||||||  | |||     
T  7904737 atgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatt 7904638  T
Q  265 tggaaaatcaattcatgatgaagatac 291  Q
    || | |||||||||| || ||||||||    
T  7904637 tgaataatcaattcacgaggaagatac 7904611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 282
Target Start/End: Original strand, 45372419 - 45372547
Alignment:
Q  154 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 253  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||| | |||||||||  ||||||||||||||||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  254 acagtaggatctggaaaatcaattcatga 282  Q
      ||||| || || |  ||||||||||||    
T  45372519 ttagtagaatttgaatcatcaattcatga 45372547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 7822693 - 7822586
Alignment:
Q  146 ttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 245  Q
    |||||| ||| | |||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||||  |||| |||||||    
T  7822693 ttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcac 7822594  T
Q  246 cggcaacc 253  Q
    ||||||||    
T  7822593 cggcaacc 7822586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 7800361 - 7800254
Alignment:
Q  146 ttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 245  Q
    |||||| ||| | |||||| ||||||||||||||  ||||| |||||| ||||||||||||||| ||||||||| |||||||||||  |||| |||||||    
T  7800361 ttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcac 7800262  T
Q  246 cggcaacc 253  Q
    ||||||||    
T  7800261 cggcaacc 7800254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 7813204 - 7813097
Alignment:
Q  146 ttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 245  Q
    |||||| ||| | |||||| ||||| |||||||| |||||  |||||||||||||||||||||| ||||||||| |||||||||||  |||| |||||||    
T  7813204 ttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcac 7813105  T
Q  246 cggcaacc 253  Q
    ||||||||    
T  7813104 cggcaacc 7813097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 45366567 - 45366718
Alignment:
Q  141 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaaga 237  Q
    ||||||||| | || |||||||||||||||||||||||| || | | ||   |||||||||||||||||  ||||||||||  |||||||||||  ||||    
T  45366567 gtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataaga 45366666  T
Q  238 gacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagat 289  Q
    |||||||| || ||||  |||||||| ||||  |||||||||||| ||||||    
T  45366667 gacttcactggtaaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 48156788 - 48156889
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 252  Q
    ||||| ||||||||| |||||||||||||| | | | ||||||||||||||||| |||||||||||  |||||||||||  ||||||||||||||| |||    
T  48156788 ggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaac 48156887  T
Q  253 ca 254  Q
    ||    
T  48156888 ca 48156889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 7238074 - 7238181
Alignment:
Q  146 ttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 245  Q
    ||||||||||| |||| ||||||||||||||||| || ||  ||||||||||||||||||| |||||||||||| | |||||||    ||||||||||||    
T  7238074 ttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T
Q  246 cggcaacc 253  Q
     |||||||    
T  7238174 tggcaacc 7238181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 49044590 - 49044690
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 252  Q
    ||||| || |||||||||||||||||| ||||    ||||||||||||||||||| ||||||||||| |||||||||||  ||||||| |||| ||||||    
T  49044590 ggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaac 49044689  T
Q  253 c 253  Q
    |    
T  49044690 c 49044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 48891126 - 48891032
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccg 247  Q
    ||||||||||||||| |||||||||||||| ||| | |||| |||||||||||| |||||||||||  | |||||||||  ||||||||| ||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccg 48891032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 49041499 - 49041597
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaa 251  Q
    |||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||||  | |||||||    |||||||||||| |||||    
T  49041499 ggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaa 49041597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 313
Target Start/End: Complemental strand, 48870252 - 48870099
Alignment:
Q  160 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagta 259  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||||||  | ||||||||   |||||| |||||||| | || ||| |    
T  48870252 tgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 48870153  T
Q  260 ggatctggaaaatcaattcatgatgaagatacggcagtgtcgtcgtcttcttct 313  Q
    | || || |  |||||||||||||| |||| ||||| ||   ||||||||||||    
T  48870152 gaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttct 48870099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 313
Target Start/End: Complemental strand, 48885938 - 48885785
Alignment:
Q  160 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagta 259  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||||||  | ||||||||   |||||| |||||||| | || ||| |    
T  48885938 tgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 48885839  T
Q  260 ggatctggaaaatcaattcatgatgaagatacggcagtgtcgtcgtcttcttct 313  Q
    | || || |  |||||||||||||| |||| ||||| ||   ||||||||||||    
T  48885838 gaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttct 48885785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 48898438 - 48898347
Alignment:
Q  157 agttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 245  Q
    ||||||||||||||||||||||| |||| | ||   |||||||| || ||||| |||||||||||| |||||||||||| ||||||||||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcac 48898347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 49048977 - 49049060
Alignment:
Q  170 aatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 253  Q
    |||||||||||||||    ||||||||||||||||||| ||||||||||| |||||||||||  ||||||| ||||| ||||||    
T  49048977 aatttgcaaaatgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacc 49049060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 282
Target Start/End: Complemental strand, 48862960 - 48862829
Alignment:
Q  154 gtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggca 250  Q
    |||||||||||||||||||||||||| || ||| ||   ||||||||||||||||| ||||| |||||  | ||||||||   ||||||||||||||| |    
T  48862960 gtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggta 48862861  T
Q  251 accacagtaggatctggaaaatcaattcatga 282  Q
    |||  || |||||  |||  ||||||||||||    
T  48862860 accttagcaggattaggatgatcaattcatga 48862829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 7765350 - 7765274
Alignment:
Q  141 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaa 217  Q
    ||||||||||  | ||||||| ||||||||||||||||| || ||| ||||||||| |||||||||| |||||||||    
T  7765350 gtgttttgcatggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaa 7765274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 307
Target Start/End: Original strand, 45385158 - 45385302
Alignment:
Q  163 aaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtagga 262  Q
    |||||||||| |||||| |||| | | ||||  ||||||||||| ||||||||||| || |||||||||   |||||||| || || ||||  |||||||    
T  45385158 aaatgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtagga 45385257  T
Q  263 tctggaaaatcaattcatgatgaagatacggcagtgtcgtcgtct 307  Q
    | ||||  |||||||||| | | | || |||||||||||||||||    
T  45385258 tttggatcatcaattcattaggcatatgcggcagtgtcgtcgtct 45385302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 300
Target Start/End: Complemental strand, 48902632 - 48902520
Alignment:
Q  188 cagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaag 287  Q
    |||| |||||||||||||| |||||||||||| | ||||||||    |||||||| |||||||||||| | |  || ||||  |||||||||||| | ||    
T  48902632 cagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgaggtag 48902533  T
Q  288 atacggcagtgtc 300  Q
    |||||||||||||    
T  48902532 atacggcagtgtc 48902520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 48170947 - 48171044
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccg 247  Q
    ||||| ||||||||| ||||||||||| || ||| ||   |||||||||| |||||| |||||||||||| | |||||||||  ||||||||||||||    
T  48170947 ggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccg 48171044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 298
Target Start/End: Original strand, 48735673 - 48735821
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggc 249  Q
    ||||| || ||||||||||||||||||||  | | ||   ||||||||||||||||| |||||||||||| | ||||||||   |||||||||||||||     
T  48735673 ggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggt 48735772  T
Q  250 aaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtg 298  Q
    |||| ||| || || || |  ||||| |||||| | ||| |||||||||    
T  48735773 aacctcagaagaatttgaactatcaactcatgaggcagaaacggcagtg 48735821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 50251169 - 50251234
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 218  Q
    |||||||||||||||  |||||||| | |||||| ||||||||||||||||||| |||||| ||||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 50251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 37827356 - 37827420
Alignment:
Q  154 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 218  Q
    |||||||||||||||||||||||||| | ||||  ||| |||||||  |||||||||||||||||    
T  37827356 gtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaac 37827420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 291
Target Start/End: Complemental strand, 47207651 - 47207513
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 252  Q
    |||||||| |||||||||||| | |||||| ||  | ||||| |||||||| || ||||| ||||||  ||| ||||||  ||||||||||||||| |||    
T  47207651 ggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgtataagagacttcaccggtaac 47207552  T
Q  253 cacagtaggatctggaaaatcaattcatgatgaagatac 291  Q
     | | ||||||   ||  |||||||||||| ||||||||    
T  47207551 tataataggattaagatgatcaattcatgaggaagatac 47207513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 48148031 - 48148138
Alignment:
Q  141 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaaga 237  Q
    |||||||| || ||| |||| ||||||||||||||| || || ||| ||   ||||||||||||||||| |||||||| ||| | ||||||||   ||||    
T  48148031 gtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataaga 48148130  T
Q  238 gacttcac 245  Q
    ||||||||    
T  48148131 gacttcac 48148138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 48875559 - 48875498
Alignment:
Q  157 agttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 218  Q
    ||||||||||||||||||| |||||||||  | ||||| ||||||||||| ||||| |||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaac 48875498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 7786158 - 7786095
Alignment:
Q  155 taagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 218  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| ||||| ||||  |||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaac 7786095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 50668759 - 50668660
Alignment:
Q  154 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 253  Q
    ||||||| |||||| ||||| ||||||| | || | ||||| ||||||||||| || ||||||||  |||||||||||  |||| | ||||| |||||||    
T  50668759 gtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacc 50668660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 33134190 - 33134282
Alignment:
Q  159 ttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccgg 248  Q
    ||||||||||||||||||||| || ||| ||   |||||||||||||| || | |||||||||  | ||||||||   |||||||||||||||    
T  33134190 ttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccgg 33134282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 12200008 - 12199914
Alignment:
Q  169 gaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 263  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||| | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12199914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 12444436 - 12444342
Alignment:
Q  169 gaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 263  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||| | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12444342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 15348579 - 15348479
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 252  Q
    ||||| |||||||||||||||||| || |  ||| ||||||||||||||||||| |||||||||||  | |||||||||  ||||||||||||||| |||    
T  15348579 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaac 15348480  T
Q  253 c 253  Q
    |    
T  15348479 c 15348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 12195006 - 12194908
Alignment:
Q  165 atgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 263  Q
    ||||||||||||||| || ||| ||||||||||||| ||||||||||||||||   | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12194908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 12439434 - 12439336
Alignment:
Q  165 atgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 263  Q
    ||||||||||||||| || ||| ||||||||||||| ||||||||||||||||   | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12439336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 4032274 - 4032368
Alignment:
Q  150 agaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttca 244  Q
    |||||||| ||||||||| ||||||||||| || ||| |||| |||||||  ||||| || ||||||||| |||||||||||  |||||||||||    
T  4032274 agaggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 24309906 - 24309799
Alignment:
Q  141 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagac 240  Q
    |||| ||| ||| |||||||||||||||||||||||||| || | | |||||||||||||||||||| |||||||||| || ||||||||   |||||||    
T  24309906 gtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 24309807  T
Q  241 ttcaccgg 248  Q
    || |||||    
T  24309806 ttaaccgg 24309799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 253
Target Start/End: Complemental strand, 24340143 - 24340031
Alignment:
Q  141 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagac 240  Q
    |||| ||||||  |||| |||||| |||||||||||||| ||   | |||||||||| ||||||||||||||||||||||| ||||||||   |||||||    
T  24340143 gtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagac 24340044  T
Q  241 ttcaccggcaacc 253  Q
    || ||||| ||||    
T  24340043 ttaaccggtaacc 24340031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 24322171 - 24322079
Alignment:
Q  161 gaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 253  Q
    |||| ||||||||||||||| | |||   ||||||||||||||||| |||||||||||  | ||||||||   ||||||||||||| ||||||    
T  24322171 gaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacc 24322079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 24366865 - 24366795
Alignment:
Q  160 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacg 230  Q
    ||||| |||||||||||||| |  |||   ||||||||||||||||||||||| |||||| | ||||||||    
T  24366865 tgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacg 24366795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 279
Target Start/End: Original strand, 47452268 - 47452394
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaac 252  Q
    |||||||| ||||||||  ||||||||  | ||| |||||||||||||||||||||||||| |||   ||||||| ||| ||||||||||||||||||||    
T  47452268 ggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaac 47452367  T
Q  253 cacagtaggatctggaaaatcaattca 279  Q
    | ||  | ||||||||  |||||||||    
T  47452368 ctcaccaagatctggattatcaattca 47452394  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 11006332 - 11006423
Alignment:
Q  162 aaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 253  Q
    |||||| || |||||||| || ||| ||||||||||||  |||||||||||||||||| |||||||||||  ||| ||||||||||||||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacc 11006423  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 253
Target Start/End: Original strand, 11024808 - 11024998
Alignment:
Q  60 atcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagt 159  Q
    |||| |||||||  |||||| ||||||||| |||||||||||  ||| ||||||||| || |||| |||||||  ||    |||| |||||| || ||||    
T  11024808 atcatcgttaagcgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattctattagt---gtgtgttgcaggggaaagt 11024904  T
Q  160 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 253  Q
    | |||||| || |||||||| |   || ||||||||||||  |||||||||||||||||  | |||||||||   |||||||||||||| ||||    
T  11024905 tcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacc 11024998  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 11015812 - 11015986
Alignment:
Q  76 gctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaatgtgaatttg 175  Q
    |||| |||||| || |||||||||||| ||| ||||||||| || |||| |||||||  ||    |||| |||||| || ||||| |||||| || ||||    
T  11015812 gcttcaaaatcaatggatcgagtttcaagagctagagttgacatgaacacaattctattagt---gtgtgttgcagtggaaagttcaaaatgcgattttg 11015908  T
Q  176 caaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 253  Q
    |||| |   || ||||||||||||  ||| |||||||||||||  | |||||||||   |||||||||||||| ||||    
T  11015909 caaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacc 11015986  T

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Target: scaffold0508 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 11991 - 11902
Alignment:
Q  141 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacg 230  Q
    |||| ||| ||| |||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||||||||| || ||||||||    
T  11991 gtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacg 11902  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 29712830 - 29712925
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccgg 248  Q
    |||||||||||||||||||||||| ||||  |    ||||||||||||||||||| ||||||||||  ||||||||||   |||||||||||||||    
T  29712830 ggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 29712925  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 29687768 - 29687676
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 245  Q
    ||||||||||||||| ||||||||||| || ||   ||| || ||||||||||| |||||||||||| ||||||| |||  ||||||||||||    
T  29687768 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 29687676  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 1812141 - 1812077
Alignment:
Q  154 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 218  Q
    ||||||||||||||  |||||||||| ||||||   |||||||||||||||||| ||||||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaac 1812077  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 29695869 - 29695804
Alignment:
Q  153 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaac 218  Q
    ||||||||||||||||||||||||||| || ||   ||| |||||||| |||||| ||||||||||    
T  29695869 ggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaac 29695804  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 21980014 - 21980094
Alignment:
Q  162 aaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagactt 242  Q
    |||||||||||| ||||| | ||||  |||||| ||||||||||| |||||||||||| ||||||||||||  ||||||||    
T  21980014 aaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagagagactt 21980094  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 21015484 - 21015393
Alignment:
Q  162 aaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 253  Q
    |||||||||| ||||||| ||||    |||||||||||||||| || ||||||||||| |||||||||||  ||||||| | ||||| ||||    
T  21015484 aaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacc 21015393  T

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