View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16364_high_2 (Length: 417)

Name: NF16364_high_2
Description: NF16364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16364_high_2
NF16364_high_2
[»] chr8 (3 HSPs)
chr8 (126-405)||(28883475-28883754)
chr8 (23-80)||(28883800-28883857)
chr8 (154-209)||(30525226-30525281)
[»] chr1 (2 HSPs)
chr1 (144-225)||(10645787-10645868)
chr1 (156-225)||(3142945-3143014)
[»] chr5 (2 HSPs)
chr5 (134-214)||(8402133-8402213)
chr5 (133-225)||(8401993-8402085)
[»] chr3 (5 HSPs)
chr3 (154-225)||(50196905-50196976)
chr3 (156-225)||(30135501-30135570)
chr3 (156-225)||(30141630-30141699)
chr3 (156-225)||(30145052-30145121)
chr3 (133-225)||(30130781-30130873)
[»] chr4 (7 HSPs)
chr4 (133-220)||(18523208-18523295)
chr4 (133-179)||(9928793-9928839)
chr4 (164-225)||(23564548-23564609)
chr4 (153-182)||(53089811-53089840)
chr4 (161-225)||(8837034-8837098)
chr4 (154-182)||(11785036-11785064)
chr4 (135-215)||(36165891-36165971)
[»] chr2 (1 HSPs)
chr2 (154-213)||(43829609-43829667)
[»] chr7 (1 HSPs)
chr7 (133-182)||(35035254-35035303)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 126 - 405
Target Start/End: Complemental strand, 28883754 - 28883475
Alignment:
Q  126 agtcccagctcaggttttcgggttgtcaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28883754 agtcccagctcaggttttcgggttgttaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 28883655  T
Q  226 atgtttttatcttaaaaaatatcggggagggggaaattgttatgaaattaaagtggccttaatgatcgttttacaactgttcctaagtagatttgtttat 325  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28883654 gtgtttttatcttaaaaaatatcggggaggggaaaattgttatgaaattaaagtggccttaatgatcgttttacaactgttcctaagtagatttgtttat 28883555  T
Q  326 cagagaatttgaactccgttttttaagttacattgacaaactcttaccaccgatctagcacctaatatatgttgtttttg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28883554 cagagaatttgaactccgttttttaagttacattgacaaactcttaccaccgatctagcacctaatatatgttgtttttg 28883475  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 28883857 - 28883800
Alignment:
Q  23 ttcaagtcaattaacttactttcaattgaatttagtgtatcttgtgatagtgatacaa 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28883857 ttcaagtcaattaacttactttcaattgaatttagtgtatcttgtgatagtgatacaa 28883800  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 30525226 - 30525281
Alignment:
Q  154 agtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagat 209  Q
    ||||||||||||||||||||||| ||||||||  ||| ||||||||| ||||||||    
T  30525226 agtgtataaatatgtttgagtactctcattctttgagctagcttttgggatgagat 30525281  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 10645787 - 10645868
Alignment:
Q  144 cgggttgtcaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    ||||||||  ||||||||||||||||||||||||||||| ||  ||| || ||||| |||||||||| ||||||||| ||||    
T  10645787 cgggttgttgagtgtataaatatgtttgagtaccctcatccttagagctatcttttaagatgagatcaaaacctatttaaca 10645868  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 3142945 - 3143014
Alignment:
Q  156 tgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    |||||||||||| | ||||||| ||||||| |||| ||||||||| ||||| |||||||| |||| ||||    
T  3142945 tgtataaatatgctcgagtaccttcattcttcgagttagcttttgggatgacatccaaacttatttaaca 3143014  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 8402213 - 8402133
Alignment:
Q  134 ctcaggttttcgggttgtcaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaa 214  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| | ||  ||| || |||||| ||||| |||||||    
T  8402213 ctcaggttttcgggctgtcgagtgtataaatatgtttgagtaccctcctcctttgagctaacttttgggatgaaatccaaa 8402133  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 8402085 - 8401993
Alignment:
Q  133 gctcaggttttcgggttgtcaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    ||||||||| ||||| |||| |||||||||||||| |||||||||||| | ||  ||| || ||||||  ||||||||||||| |||| ||||    
T  8402085 gctcaggttctcgggctgtcgagtgtataaatatgcttgagtaccctcctcctttgagctaacttttggaatgagatccaaacttatttaaca 8401993  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 50196905 - 50196976
Alignment:
Q  154 agtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    ||||||||||||||||| | ||||||||| ||  ||| || |||||| ||||||||||||||||||| ||||    
T  50196905 agtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatccaaacctatttaaca 50196976  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 30135570 - 30135501
Alignment:
Q  156 tgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    |||||||||||| ||||||||||||||  |  ||| || |||||| |||||||||||| |||||| ||||    
T  30135570 tgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30135501  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 30141699 - 30141630
Alignment:
Q  156 tgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    |||||||||||| ||||||||||||||  |  ||| || |||||| |||||||||||| |||||| ||||    
T  30141699 tgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30141630  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 30145121 - 30145052
Alignment:
Q  156 tgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    |||||||||||| ||||||||||||||  |  ||| || |||||| |||||||||||| |||||| ||||    
T  30145121 tgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30145052  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 30130873 - 30130781
Alignment:
Q  133 gctcaggttttcgggttgtcaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    ||||||||| | ||| |||  |||||||||||||| ||||||| | ||||  |  ||| ||| ||||| ||||||||||||||||||| ||||    
T  30130873 gctcaggttcttgggctgttgagtgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctatttaaca 30130781  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 18523295 - 18523208
Alignment:
Q  133 gctcaggttttcgggttgtcaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctatt 220  Q
    |||||||||| ||||||||  |   ||||||||||||||||||||||||| ||  |||||| |||||| ||  |||||||| ||||||    
T  18523295 gctcaggtttccgggttgttgaacatataaatatgtttgagtaccctcatcctttgaggtatcttttgggagcagatccaagcctatt 18523208  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 9928839 - 9928793
Alignment:
Q  133 gctcaggttttcgggttgtcaagtgtataaatatgtttgagtaccct 179  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||    
T  9928839 gctcagatttccgggttgttgagtgtataaatatgtttgagtaccct 9928793  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 23564609 - 23564548
Alignment:
Q  164 tatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    |||| |||||||||||||| ||  ||| || |||||| ||||||||||||||||||| ||||    
T  23564609 tatgcttgagtaccctcatcctttgagctaacttttgggatgagatccaaacctatttaaca 23564548  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 53089840 - 53089811
Alignment:
Q  153 aagtgtataaatatgtttgagtaccctcat 182  Q
    ||||||||||||||||||||||||||||||    
T  53089840 aagtgtataaatatgtttgagtaccctcat 53089811  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 8837098 - 8837034
Alignment:
Q  161 aaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaacctattcaaca 225  Q
    |||||||||||||||||||||||||  ||| ||   |||| |||||||| |||||||||| ||||    
T  8837098 aaatatgtttgagtaccctcattctttgagctaaactttgggatgagattcaaacctatttaaca 8837034  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 11785036 - 11785064
Alignment:
Q  154 agtgtataaatatgtttgagtaccctcat 182  Q
    |||||||||||||||||||||||||||||    
T  11785036 agtgtataaatatgtttgagtaccctcat 11785064  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 36165971 - 36165891
Alignment:
Q  135 tcaggttttcgggttgtcaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaaac 215  Q
    ||||| ||||||| |||  |||||||||| ||||||||| |||||||| ||   || || |||||| ||||||||||||||    
T  36165971 tcaggctttcgggatgttgagtgtataaacatgtttgagcaccctcatcctttaagctaacttttgcgatgagatccaaac 36165891  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 43829667 - 43829609
Alignment:
Q  154 agtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagatccaa 213  Q
    |||||||||||||||||||||| |||||||||  ||| ||||||||| ||| ||||||||    
T  43829667 agtgtataaatatgtttgagtatcctcattctttgagctagcttttg-gataagatccaa 43829609  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 35035303 - 35035254
Alignment:
Q  133 gctcaggttttcgggttgtcaagtgtataaatatgtttgagtaccctcat 182  Q
    |||||||||||| | ||||  |||||||||||||||||||||| ||||||    
T  35035303 gctcaggttttcagtttgttgagtgtataaatatgtttgagtagcctcat 35035254  T

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