View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16364_high_5 (Length: 362)
Name: NF16364_high_5
Description: NF16364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16364_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 27815834 - 27816171
Alignment:
| Q |
7 |
gtaaaaaatcatacataatctagaatgaacttaatttttgaaaaataattgtttcgaattaggcttagcacccaatcctatgatccaaagtttcgcaaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27815834 |
gtaaaaaatcatacataatctagaatgaacttaatttttgaaaaataattgtttcgaattaggcttagcacccaatcctatgatccaaagtttcgcaaag |
27815933 |
T |
|
| Q |
107 |
gcaagctagaatttaataaagctcttcaaagaatctaaagattatgtgtgccagtaaagacaatgaagcattgaataaggcgttcaaagtccataagagc |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27815934 |
ggaagctagaatttaataaagctcttcaaagaatctaaagattatgtgtgccagtaaagacaatgaagcattgaataaggcgttcaaagtccataagagc |
27816033 |
T |
|
| Q |
207 |
tctccatgccatcaaatagttacttgatatttgcaccataatggtattattgtcacgatgcacacacgattatatctcttttgaatctataaatagagca |
306 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27816034 |
tctccatgccatcaaacagttacttgatatttgcaccataatggtattattgtcacgatgcacacacgattatatctcttttgaatctataaatagagca |
27816133 |
T |
|
| Q |
307 |
ccatattnnnnnnntgtacgaatttctcattccaagat |
344 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
27816134 |
ccatattaaaaaaatgtacgaatttctcattccaagat |
27816171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 27814251 - 27814362
Alignment:
| Q |
117 |
atttaataaagctcttcaaagaatctaaagattatgtgtgccagtaaagacaatgaagcattgaataaggcgttcaaagtccataagagctctccatgcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | |||||||||| ||||||| ||||||||| |||| ||||| |
|
|
| T |
27814251 |
atttaataaagctcttcaaagaatctaaagactatgtgtgccagtcaagacagtgaaggactgaataaggcattcaaagaccataagagttctcaatgcc |
27814350 |
T |
|
| Q |
217 |
atcaaatagtta |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27814351 |
atcaaatagtta |
27814362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 27814361 - 27814426
Alignment:
| Q |
279 |
tatctcttttgaatctataaatagagcaccatattnnnnnnntgtacgaatttctcattccaagat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
27814361 |
tatctcttttgaatctataaatagagcaccgtattaaaaaaatgtaggaatttctcattccaagat |
27814426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 38710541 - 38710835
Alignment:
| Q |
9 |
aaaaaatcatacataatctagaatgaacttaatttttgaaaaat-aattgtttcgaattaggcttagcacccaatcctatgatccaaagtttcgcaaagg |
107 |
Q |
| |
|
|||||||||||||||| ||| ||||| | ||||| | |||| ||||| || |||||||||||| ||||||| |||| |||||||||| | |||| | |
|
|
| T |
38710541 |
aaaaaatcatacataaattaggatgaattcaatttaaaataaatcaattgatttgaattaggcttatcacccaaccctacgatccaaagt--cacaaaag |
38710638 |
T |
|
| Q |
108 |
caagctagaatttaataaagctcttcaaagaatctaaagattatgtgtgccagtaaagacaatgaagcattgaataaggcgttcaaagtccataagagct |
207 |
Q |
| |
|
|||||| || ||||||| | |||| | ||||||||||||||||||| || ||||| | |||||| |||||||||||| ||||||||| | ||| |
|
|
| T |
38710639 |
aaagctaagatccaataaagtttttcacataatctaaagattatgtgtgtcactaaaggctgcgaagcaccgaataaggcgtttaaagtccatcaaagcc |
38710738 |
T |
|
| Q |
208 |
ctccatgccatcaaatagttacttgatatttgcaccataatggtattattgtcacgatgcacacacgattatatctcttttgaatctataaatagag |
304 |
Q |
| |
|
|| | || ||||||| | | || ||| |||||||||||||| ||||| |||| |||||||||| ||| ||||| ||| ||||||||||| |||| |
|
|
| T |
38710739 |
ctgcttgtcatcaaacattgacctgacctttgcaccataatgttattaccgtcatgatgcacacattattgtatctttttggaatctataaacagag |
38710835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University