View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16364_high_9 (Length: 292)

Name: NF16364_high_9
Description: NF16364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16364_high_9
NF16364_high_9
[»] chr4 (1 HSPs)
chr4 (95-283)||(33370282-33370473)
[»] chr7 (3 HSPs)
chr7 (96-282)||(32548079-32548268)
chr7 (95-171)||(35770741-35770817)
chr7 (140-188)||(46251917-46251965)
[»] chr5 (1 HSPs)
chr5 (95-283)||(32943890-32944082)
[»] chr3 (2 HSPs)
chr3 (95-163)||(49288180-49288248)
chr3 (193-250)||(49085897-49085949)
[»] chr2 (3 HSPs)
chr2 (140-188)||(26893758-26893806)
chr2 (140-188)||(26899197-26899245)
chr2 (140-188)||(6852190-6852238)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 95 - 283
Target Start/End: Complemental strand, 33370473 - 33370282
Alignment:
Q  95 cacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagt 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33370473 cacttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagt 33370374  T
Q  195 ttgaaaggattttgaggaatatgttttatgtgatgtgatgatgaatgttgttgtt---tcttgcctgaaaattatctgcattcttctctctc 283  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||   || ||  |||||||||||||||||||||||||||    
T  33370373 ttgaaaggattttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatgattgaaaattatctgcattcttctctctc 33370282  T

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Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 32548268 - 32548079
Alignment:
Q  96 acttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32548268 acttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtt 32548169  T
Q  196 tgaaaggattttgaggaatatgttttatgtgatgtgatgatgaatgttgt---tgtttcttgcctgaaaattatctgcattcttctctct 282  Q
    |||||||||||||||||||||| |||||||| |||||||||| |||||||   |||||||||  ||||||||||||||||||||||||||    
T  32548168 tgaaaggattttgaggaatatgctttatgtggtgtgatgatgtatgttgttgttgtttcttgattgaaaattatctgcattcttctctct 32548079  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 35770741 - 35770817
Alignment:
Q  95 cacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtg 171  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| || || |||||| |||||||    
T  35770741 cacttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattaaataaattggatgtgtg 35770817  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 46251917 - 46251965
Alignment:
Q  140 ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg 188  Q
    ||||||||||| ||||||| |||||| ||||| |||| |||||||||||    
T  46251917 ttgttatgggaattgaagatattgaaggtgtgagaaaattggagtgatg 46251965  T

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Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 95 - 283
Target Start/End: Complemental strand, 32944082 - 32943890
Alignment:
Q  95 cacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagt 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32944082 cacttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaagaaattgaatgggtgggaaatttggagtgatgatgagt 32943983  T
Q  195 ttgaaaggatttt-gaggaatatgttttatgtgatgtgatgatgaatgttgttgtt---tcttgcctgaaaattatctgcattcttctctctc 283  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||   || ||  |||||||||||||||||||||||||||    
T  32943982 ttgaaaggatttttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatgattgaaaattatctgcattcttctctctc 32943890  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 49288248 - 49288180
Alignment:
Q  95 cacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattg 163  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  49288248 cacttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattgaataaattg 49288180  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 49085949 - 49085897
Alignment:
Q  193 gtttgaaaggattttgaggaatatgttttatgtgatgtgatgatgaatgttgttgttt 250  Q
    ||||||||||||||||||||||| | |||||||     ||||||||||||||||||||    
T  49085949 gtttgaaaggattttgaggaataagctttatgt-----gatgatgaatgttgttgttt 49085897  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 26893806 - 26893758
Alignment:
Q  140 ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg 188  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  26893806 ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagtgatg 26893758  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 26899245 - 26899197
Alignment:
Q  140 ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg 188  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  26899245 ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagtgatg 26899197  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 6852238 - 6852190
Alignment:
Q  140 ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg 188  Q
    ||||||||||| |||||||||||||||||||  ||||||||||| ||||    
T  6852238 ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagcgatg 6852190  T

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