View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16364_low_16 (Length: 209)
Name: NF16364_low_16
Description: NF16364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16364_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 3703894 - 3703777
Alignment:
| Q |
31 |
aaaaaccaaagttaaaaacacatgatacaaagggacgatgcagaaactatttctaagcaaatcctaatcacaatataaataaaacacacggatgcataat |
130 |
Q |
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| T |
3703894 |
aaaaaccaatgttaaaaaca--tgatacaaagggacgatgcagaaactatttctaagcaaatcctaatcacaatataaataaaacacacggatgcataat |
3703797 |
T |
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| Q |
131 |
agcatgaacaactgctaaac |
150 |
Q |
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| T |
3703796 |
agcatgaacaactgctaaac |
3703777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 3699158 - 3698980
Alignment:
| Q |
20 |
ctgtgatacagaaaaaccaaagttaaaaacacatgatacaaagggacgatgcagaa--------actatttctaa-gcaaatcctaatcacaatataaat |
110 |
Q |
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|||||| |||||||||| || |||||||||| ||||||||| ||| ||||||||| ||||||||||| ||||| || ||||||||||||||| |
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| T |
3699158 |
ctgtgacacagaaaaacaaatgttaaaaacatatgatacaa-gggctgatgcagaatagcataaactatttctaaagcaaagcc-aatcacaatataaat |
3699061 |
T |
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| Q |
111 |
aaaacacacggatgcataatagcatgaacaactgctaaacaaatgttgttaaaaaactacaagtgaacattaaaatagctttt |
193 |
Q |
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| T |
3699060 |
agaacaca--gatgcagaatagcatgaacaactgctaaacaaatgttgttaaaaaattacaagtgaacattaaaatagctttt |
3698980 |
T |
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