View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16364_low_2 (Length: 496)
Name: NF16364_low_2
Description: NF16364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16364_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 14 - 487
Target Start/End: Complemental strand, 45102664 - 45102190
Alignment:
| Q |
14 |
ttttatgagttctaacttgactgtgaaaggacttaaggtgaagaacagccctcagttcaatttcagatttgatgcctgcaataatgtccatatagaatca |
113 |
Q |
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| T |
45102664 |
ttttatgagttctaacttgactgtgaaaggacttaaggtgaagaacagccctcagttcaatttcagatttgatgcctgcaataatgtccatatagaatca |
45102565 |
T |
|
| Q |
114 |
atttatatcacagctccaaaaataagccccaacaccgatgggatacacttagaatatgccaatgatgtgaaaatatataattctgtgatttccaatggtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45102564 |
atttatatcacagctccaaaaataagccccaacaccgatgggattcacttagaatatgccaatgatgtgaaaatatataattctgtgatttccaatggtt |
45102465 |
T |
|
| Q |
214 |
agttgccaaaatatttgttttgcagtatccttgtttattgcatcaaaaacattaacaaaacatggcggatttatctttcataggtgatgactgtgtgtcc |
313 |
Q |
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| T |
45102464 |
agttgccaaaatatttgttttgcagtatccttgtttattgcattaaaaacattaacaatacatggcggatttatctttcataggtgatgactgtgtgtcc |
45102365 |
T |
|
| Q |
314 |
attggaaccgggagctatgatgttgatataaagaacattacttgtggacctagtcatggaattaggtaacctatattatttgcttca-ttcatatgccnn |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
45102364 |
attggaaccgggagctatgatgttgatataaagaacattacttgtggacctagtcatggaattaggtaacctatattatttgctttatttcatatgcctt |
45102265 |
T |
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| Q |
413 |
nnnnnncttcttcttcttcatacggatcctaaggaaaatgcgtcatgataatccaaagttcggttgagaataatc |
487 |
Q |
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| T |
45102264 |
ttttttcttcttcttcttaatacggatcctaagaaaaatgcatcatgataatccaaagttcggtcgagagtaatc |
45102190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 38661489 - 38661691
Alignment:
| Q |
14 |
ttttatgagttctaacttgactgtgaaaggacttaaggtgaagaacagccctcagttcaatttcagatttgatgcctgcaataatgtccatatagaatca |
113 |
Q |
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|||||||||||| || |||||||| ||||||||| | | || ||||| ||||| ||| ||||||||||||||| |||| | | ||| ||| | |||||| |
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| T |
38661489 |
ttttatgagttcaaatttgactgtacaaggacttaggataaaaaacagtcctcaattccatttcagatttgatggctgccaaagtgtgcatgtggaatca |
38661588 |
T |
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| Q |
114 |
atttatatcacagctccaaaaataagccccaacaccgatgggatacacttagaatatgccaatgatgtgaaaatatataattctgtgatttccaatggtt |
213 |
Q |
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| T |
38661589 |
attttcataacagctccagcacttagccccaacactgatggaatacacatagaaaataccaatgatgtgaaaatatataattccgtagtttccaatggtt |
38661688 |
T |
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| Q |
214 |
agt |
216 |
Q |
| |
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||| |
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| T |
38661689 |
agt |
38661691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 382
Target Start/End: Original strand, 38661774 - 38661868
Alignment:
| Q |
288 |
ctttcataggtgatgactgtgtgtccattggaaccgggagctatgatgttgatataaagaacattacttgtggacctagtcatggaattaggtaa |
382 |
Q |
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|||| ||||||||||||||||| |||||||| | || ||||||||||||||||||| || || || |||||||| ||||||| ||||||||| |
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| T |
38661774 |
cttttataggtgatgactgtgtttccattgggtctggttgctatgatgttgatataaaaaatatcacatgtggaccaggtcatggcattaggtaa |
38661868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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