View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16364_low_5 (Length: 377)
Name: NF16364_low_5
Description: NF16364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16364_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 29564469 - 29564112
Alignment:
| Q |
14 |
atatgagacagagggagtaataataat-----gtagaactaagtgtaaaccaaaatagaatgaaataaagtgaaaatgatta---actaaatttaaaata |
105 |
Q |
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| T |
29564469 |
atatgagacagagggagtaataataatataatgtacaactaagtgtaaaccaaaatagaatgaaataaagtgaaaatgattattaactaaatttaaaata |
29564370 |
T |
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| Q |
106 |
-taatttatggttgaccaatgaatggcatattgggtnnnnnnnnnnnnnnnnnnnnnnnccagacaagtctttttcaaattcccatgaagaggcagtgct |
204 |
Q |
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| T |
29564369 |
ataatttatggttgaccaatgaatggcatattgggtaaaaagacaaacaaaaacaaaaaccagacaagtctttttcaaattcccatgaagaggcagtgct |
29564270 |
T |
|
| Q |
205 |
cgacgttgggaaataaataacagtcacnnnnnnngcacagtgtctaacgttgttgttattattgtcatttcaaaatctctgttcttcctcttcacgaggt |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29564269 |
cgacgttgggaaataaataacagtcacacaaaaagcacagtgtctaacgttgttgttattattgtcatttcaaaatctctgttcttcctcttcacgaggt |
29564170 |
T |
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| Q |
305 |
tccacgcctagtacttagtaccgcttcttccatttattattactacatacaccttcct |
362 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29564169 |
tgcacgcctagtacttagtaccgcttcttccatttattattactacatacaccttcct |
29564112 |
T |
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