View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16364_low_6 (Length: 370)
Name: NF16364_low_6
Description: NF16364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16364_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 32 - 353
Target Start/End: Complemental strand, 45181272 - 45180953
Alignment:
| Q |
32 |
gagcagagacaacgccggtactgcattacttgtcagtttagggaagacgaccctaccaccttgtttgagcaaaacaatggggacccctgaattgcagatg |
131 |
Q |
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| T |
45181272 |
gagcagagacaacgccggtactgcattacttgtcagtttagggaagacgaccctaccaccttgtttgagcaaaacaatggggacccctgaattgcagatg |
45181173 |
T |
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| Q |
132 |
gatgtgttggtgagcaacaaatatgcacagcattcacttcttttggtactaacaactctctatattgctaacaattagcagcaccttgtcctttcagact |
231 |
Q |
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| T |
45181172 |
gatgtgttggtgagcaacaaatatgcacagcattcacttcttttggtactaacaactctctatattgctaacaattagcagcaccttgtcctttcagact |
45181073 |
T |
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| Q |
232 |
cgtttggttgggacttgtgtttcaagtttcatgttgnnnnnnncattaaataaagaataaatggtagttagagacnnnnnnnnntcagtattccaatacc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
45181072 |
cgtttggttgggacttgtgtttcaagtttcatgttgtttttttcattaaataaagaataaatggtatttagagac--aaaaaaatcagtattccaatacc |
45180975 |
T |
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| Q |
332 |
gtatacaaataaatgtagatct |
353 |
Q |
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|||||||||||||||||||||| |
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| T |
45180974 |
gtatacaaataaatgtagatct |
45180953 |
T |
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