View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16365_low_4 (Length: 350)
Name: NF16365_low_4
Description: NF16365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16365_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 25747602 - 25747317
Alignment:
| Q |
18 |
ttgatcgtgattggtactctccaaaacaccttctcagccctcccaccctctatgatttcccagtaatactactattccattattatgaatatgattcttc |
117 |
Q |
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| T |
25747602 |
ttgatcgtgattggtactctccaaaacaccttctcagccctcccaccctttatgatttcccagtaatactactattccattattatga------ttcttc |
25747509 |
T |
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| Q |
118 |
tctttttatttcttcatatgcatgcatgcat----tattaattgcattctcatttatataaatattttt-cctttacagggtgatcggttcattcccaat |
212 |
Q |
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| T |
25747508 |
tctttttatttcttcatatgcatgcatgcatgcattaattattgcattctcatttatataatttttttttcctttacagggtgatcggttcattcccaat |
25747409 |
T |
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| Q |
213 |
aggagtttgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatattttt |
304 |
Q |
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| T |
25747408 |
aggagtttgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatattttt |
25747317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 25739198 - 25738912
Alignment:
| Q |
18 |
ttgatcgtgattggtactctccaaaacaccttctcagccctcccaccctctatgatttcccagtaatactactattccattattatgaatatgattcttc |
117 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25739198 |
ttgatcgtgattggtactctccaaaacacctcctcatccctcccaccctttatgatttcccagtaatactactattccattattatga------ttcttc |
25739105 |
T |
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| Q |
118 |
tctttttatttcttcatatgcatgcatgcat----tattaattgcattctcatttatataaatattttt--cctttacagggtgatcggttcattcccaa |
211 |
Q |
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| T |
25739104 |
tctttttatttcttcatatgcatgcatgcatgcattaattattgcattctcatttatataattttttttttcctttacagggtgatcggttcattcccaa |
25739005 |
T |
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| Q |
212 |
taggagtttgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatattttt |
304 |
Q |
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| T |
25739004 |
taggagtttgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatattttt |
25738912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 25738899 - 25738856
Alignment:
| Q |
301 |
ttttcaacgttttcttcaatttctacac-cccctcttctttctt |
343 |
Q |
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| T |
25738899 |
ttttcaacgttttcttcaatttctacacccccctcttctttctt |
25738856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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