View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16366_high_1 (Length: 242)
Name: NF16366_high_1
Description: NF16366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16366_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 45517838 - 45517620
Alignment:
| Q |
15 |
gatgaagcagaagactatgcagccttgataatggaatctgtggacaacaaaaacaaaggctacattgaggtaccatatattatattata----------g |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45517838 |
gatgaagcagaagactatgcagccttgataatggaatctgtggacaacaaaaacaaaggctacattgaggtaccatatattatattatattatattatag |
45517739 |
T |
|
| Q |
105 |
tactactccaatttagccgcctcaacattagaatttaccatatgctagctgttaataatgattaatgaaaaatgtatactatcaattattatgtccgtga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45517738 |
tactactccaatttagccgcctcaacattagaatttaccatatgctagctgttaataatgattaatgaaaaatgtatactatcaattattatgtccgtga |
45517639 |
T |
|
| Q |
205 |
catatatatatgtgtagat |
223 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
45517638 |
catatatacatgtgtagat |
45517620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University