View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16366_low_1 (Length: 448)

Name: NF16366_low_1
Description: NF16366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16366_low_1
NF16366_low_1
[»] chr4 (13 HSPs)
chr4 (133-429)||(54376352-54376648)
chr4 (4-86)||(56271366-56271447)
chr4 (14-86)||(7627854-7627926)
chr4 (4-86)||(13086028-13086109)
chr4 (14-84)||(30170012-30170083)
chr4 (25-86)||(7632465-7632527)
chr4 (15-84)||(40609618-40609687)
chr4 (18-86)||(13139154-13139223)
chr4 (14-86)||(22819655-22819728)
chr4 (14-86)||(41486135-41486208)
chr4 (14-86)||(53654742-53654815)
chr4 (19-86)||(17475328-17475396)
chr4 (14-84)||(38338914-38338986)
[»] chr7 (8 HSPs)
chr7 (14-86)||(41893921-41893994)
chr7 (14-86)||(3343322-3343395)
chr7 (14-86)||(21023109-21023182)
chr7 (14-86)||(33180702-33180775)
chr7 (31-86)||(35586782-35586838)
chr7 (14-86)||(11564899-11564972)
chr7 (14-86)||(16980303-16980376)
chr7 (14-86)||(44184551-44184624)
[»] chr5 (12 HSPs)
chr5 (14-86)||(189695-189768)
chr5 (14-86)||(10649441-10649514)
chr5 (14-86)||(19481174-19481247)
chr5 (14-86)||(32912044-32912117)
chr5 (14-86)||(34124627-34124700)
chr5 (14-86)||(6517718-6517791)
chr5 (6-86)||(19839970-19840051)
chr5 (14-86)||(9581585-9581658)
chr5 (14-86)||(8675425-8675498)
chr5 (14-86)||(21064218-21064291)
chr5 (14-86)||(41175698-41175771)
chr5 (26-86)||(54709-54769)
[»] chr1 (21 HSPs)
chr1 (14-86)||(33125317-33125388)
chr1 (14-86)||(10890038-10890111)
chr1 (14-86)||(13489668-13489741)
chr1 (14-86)||(15705054-15705127)
chr1 (14-86)||(34254343-34254416)
chr1 (14-86)||(32915064-32915137)
chr1 (14-86)||(52362488-52362561)
chr1 (4-86)||(51286351-51286432)
chr1 (44-86)||(32926265-32926307)
chr1 (14-86)||(46543434-46543507)
chr1 (14-86)||(47214214-47214287)
chr1 (14-84)||(21340530-21340601)
chr1 (14-86)||(37275025-37275098)
chr1 (14-86)||(16986944-16987017)
chr1 (14-86)||(33054080-33054153)
chr1 (14-86)||(34008186-34008259)
chr1 (14-86)||(36577404-36577477)
chr1 (14-86)||(37588667-37588740)
chr1 (14-86)||(44789135-44789208)
chr1 (14-86)||(52714893-52714966)
chr1 (31-86)||(47820510-47820566)
[»] chr6 (10 HSPs)
chr6 (14-86)||(18141293-18141366)
chr6 (14-86)||(20822860-20822933)
chr6 (14-86)||(6531175-6531248)
chr6 (19-86)||(32459514-32459582)
chr6 (14-84)||(28944971-28945042)
chr6 (14-86)||(754430-754503)
chr6 (14-86)||(24842374-24842446)
chr6 (14-86)||(33421766-33421839)
chr6 (14-86)||(35213553-35213626)
chr6 (31-86)||(34036985-34037041)
[»] chr3 (19 HSPs)
chr3 (14-86)||(34057945-34058018)
chr3 (14-86)||(55400005-55400078)
chr3 (14-86)||(24095398-24095471)
chr3 (16-86)||(3953469-3953540)
chr3 (14-86)||(39697214-39697287)
chr3 (4-86)||(49417581-49417662)
chr3 (25-86)||(44910703-44910764)
chr3 (14-86)||(21196130-21196203)
chr3 (14-86)||(22371197-22371270)
chr3 (14-86)||(24482955-24483028)
chr3 (14-86)||(31376757-31376830)
chr3 (6-86)||(32759884-32759964)
chr3 (14-86)||(37508490-37508563)
chr3 (14-86)||(42683833-42683906)
chr3 (14-86)||(43904979-43905052)
chr3 (14-86)||(46019468-46019541)
chr3 (14-86)||(46852124-46852196)
chr3 (14-86)||(50206962-50207035)
chr3 (19-86)||(6999175-6999243)
[»] chr2 (15 HSPs)
chr2 (14-86)||(6999060-6999133)
chr2 (14-86)||(9634428-9634501)
chr2 (14-86)||(15269867-15269940)
chr2 (14-86)||(32869832-32869905)
chr2 (14-86)||(2563710-2563783)
chr2 (14-86)||(6170636-6170709)
chr2 (14-86)||(13765406-13765479)
chr2 (14-86)||(14233711-14233784)
chr2 (31-86)||(20911807-20911862)
chr2 (32-86)||(37105647-37105702)
chr2 (14-86)||(26206853-26206926)
chr2 (14-86)||(35589379-35589452)
chr2 (14-86)||(39449109-39449182)
chr2 (14-86)||(44254605-44254678)
chr2 (32-84)||(38257304-38257356)
[»] scaffold0136 (1 HSPs)
scaffold0136 (14-84)||(38433-38504)
[»] chr8 (10 HSPs)
chr8 (14-86)||(4658255-4658328)
chr8 (14-86)||(9549191-9549264)
chr8 (14-86)||(23793082-23793155)
chr8 (14-86)||(31596954-31597027)
chr8 (25-86)||(8671559-8671621)
chr8 (18-86)||(12707155-12707224)
chr8 (14-86)||(16872148-16872221)
chr8 (14-86)||(29991418-29991491)
chr8 (14-86)||(34718121-34718194)
chr8 (14-86)||(36110144-36110217)
[»] scaffold0532 (1 HSPs)
scaffold0532 (14-86)||(10970-11043)
[»] scaffold0471 (1 HSPs)
scaffold0471 (14-86)||(13-86)
[»] scaffold0221 (1 HSPs)
scaffold0221 (14-86)||(8220-8293)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 133 - 429
Target Start/End: Original strand, 54376352 - 54376648
Alignment:
Q  133 ttccacctacacaaatcgttttcagaacttagnnnnnnncacaaacttttgtgtcccgcgaaagcataaatgaaaaattagttcaatgattctcagcaat 232  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54376352 ttccacctacacaaatcgttttcagaacttagaaaaaaacacaaacttttgtgtcccgcgaaagcataaatgaaaaattagttcaatgattctcggcaat 54376451  T
Q  233 agcagtggcaaactcagccgcaacacactattttccctaatcaacaaagcttcaacctttcctcatcttgctcaaacccacgctcaattcattctcaatg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54376452 agcagtggcaaactcagccgcaacacactattttccctaatcaacaaagcttcaacatttcctcatcttgctcaaacccacgctcaattcattctcaatg 54376551  T
Q  333 gttaccgtttcgacctcgccaccatcaccaaactcactcaaaaactcttcgacttctccgccacgcgccacgcacgcgccctcttcttctctgttcc 429  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54376552 gttaccgtttcgacctcgccaccctcaccaaactcactcaaaaactcttcgacttctccgccacgcgccacgcacgcgccctcttcttctctgttcc 54376648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 56271447 - 56271366
Alignment:
Q  4 agagagataaaaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||||  ||||||||||||| ||||||  ||| ||| || ||||| |||||||||||||||| ||||||||||||||    
T  56271447 agagagataaaa--taaaaagtaatgcaagtatgggagaaaaagttgtcacaaaagttatcataaaatggatgttcaaatatca 56271366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 7627926 - 7627854
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| |||||||| || ||||||| |||||||| |||||||||||    
T  7627926 aaagtaaaaa-taatgtgagtatgagagagaaaattatcacaaaaattatcattaaatgaatattcaaatatca 7627854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 13086109 - 13086028
Alignment:
Q  4 agagagataaaaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||||  |||||||||||| |||||||| ||||||| || | ||| ||||| ||| |||||||||| ||||||||||    
T  13086109 agagagataaaa--taaaaagtaatgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatgaatgatcaaatatca 13086028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 30170012 - 30170083
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatat 84  Q
    |||||||||| ||||| |||||||| ||||||| || ||||| ||||| |||||||||  ||||||||||||    
T  30170012 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatat 30170083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 7632465 - 7632527
Alignment:
Q  25 taatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||| |||||||||||||||| |||||||| ||||| ||| ||| ||| |||||||||||||    
T  7632465 taatgtgagtatgaaagagaaaattatcacaaaagttgtcaaaaattgattgttcaaatatca 7632527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 40609687 - 40609618
Alignment:
Q  15 aagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatat 84  Q
    ||||||||| ||||| |||||||| ||||||| || ||||| |||||||||| ||||| ||||||||||||    
T  40609687 aagtaaaaa-taatgtgagtatgagagagaaagttgtcacaaaagttatcattaaatggatgttcaaatat 40609618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 13139223 - 13139154
Alignment:
Q  18 taaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||| |||||| |||||||| ||||||| || ||| | || ||||||||||||| ||||||||||||||    
T  13139223 taaaaggtaatgtgagtatgagagagaaagttgtcataaaaattatcataaaatggatgttcaaatatca 13139154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 22819728 - 22819655
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || |  || ||||| ||| |||||| ||||||||||||||    
T  22819728 aaagtaaaaagtaatgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaatggatgttcaaatatca 22819655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 41486135 - 41486208
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || |  || |||||||||  ||||| ||||||||||||||    
T  41486135 aaagtaaaaagtaatgtgagtatgagagagaaagttgttgcaaaagttatcactaaatggatgttcaaatatca 41486208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 53654742 - 53654815
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||  || ||||||||||||| || ||||| || ||||||||||||  ||||||||||||||    
T  53654742 aaagtaaaaaataatatgaatatgaaagagaaagttgtcacaaaaattatcataaaatagatgttcaaatatca 53654815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 17475396 - 17475328
Alignment:
Q  19 aaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||| ||||| |||||||| ||||||| || ||| | |||||||||  ||||||||||||||||||||    
T  17475396 aaaaaataatgtgagtatgagagagaaagttgtcaaaaaagttatcaccaaatgaatgttcaaatatca 17475328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 38338914 - 38338986
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaat-gaatgttcaaatat 84  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| || |||||| || |||||||||||    
T  38338914 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcgtaaaatagattgttcaaatat 38338986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 41893994 - 41893921
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||||||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  41893994 aaagtaaaaagtaatgtgagtatgaaagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 41893921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 3343322 - 3343395
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| || ||||| ||||||| || ||||| || || |||||||||||||||||||||||||    
T  3343322 aaagtaaaaagtaatgtgaatatgagagagaaaattgtcacaaaaattgtcataaaatgaatgttcaaatatca 3343395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 21023109 - 21023182
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| || ||||||||||||| ||||| || ||||| |||  ||||||||||||||||||||    
T  21023109 aaagtaaaaaataatgtgaatatgaaagagaaaattatcgcaaaagttgtcactaaatgaatgttcaaatatca 21023182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 33180702 - 33180775
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || ||| | ||||| ||| |||||||||||||||||||||    
T  33180702 aaagtaaaaaataatgtgagtatgagagagaaaattgtcataaaagttgtcacaaaatgaatgttcaaatatca 33180775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 35586782 - 35586838
Alignment:
Q  31 gagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||| ||||||| || ||||| |||||||||||||||| ||||||||||||||    
T  35586782 gagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatca 35586838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 11564972 - 11564899
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| ||||  || ||||| ||| ||||| |||||||||||||||    
T  11564972 aaagtaaaaaataatgtgagtatgagagagaaagttatagcaaaagttgtcacaaaataaatgttcaaatatca 11564899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 16980376 - 16980303
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||| | ||||||| || |  || ||||| ||| |||||||||||||||||||||    
T  16980376 aaagtaaaaagtaatgtgagtataagagagaaagttgttgcaaaagttgtcacaaaatgaatgttcaaatatca 16980303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 44184551 - 44184624
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| ||  |||||  ||||||||||||||    
T  44184551 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcgcaaaatagatgttcaaatatca 44184624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 189695 - 189768
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| |||||||||||||||| ||||||||||||||    
T  189695 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatca 189768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 10649514 - 10649441
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||||||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  10649514 aaagtaaaaagtaatgtgagtatgaaagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 10649441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 19481174 - 19481247
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| |||||||||||||||| ||||||||||||||    
T  19481174 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatca 19481247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 32912117 - 32912044
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| || ||||||||||||||||||||||||||||    
T  32912117 aaagtaaaaagtaatgtgagtatgagagagaaaattgtcacaaaaattatcataaaatgaatgttcaaatatca 32912044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 34124700 - 34124627
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| |||||||| || ||||||||||||| ||||||||||||||    
T  34124700 aaagtaaaaagtaatgtgagtatgagagagaaaattatcacaaaaattatcataaaatggatgttcaaatatca 34124627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 6517791 - 6517718
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  6517791 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 6517718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 19839970 - 19840051
Alignment:
Q  6 agagataaaaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||| |||||||||| ||||| |||||||| ||||||| || ||||| || || |||||||||||||||||||||||||    
T  19839970 agagatataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaaattgtcataaaatgaatgttcaaatatca 19840051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 9581658 - 9581585
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||||||||||| || ||||| |||||||||  ||||| ||||||||||||||    
T  9581658 aaagtaaaaaataatgtgagtatgaaagagaaagttgtcacaaaagttatcactaaatggatgttcaaatatca 9581585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 8675425 - 8675498
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagag-aaattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| |||| ||||| |  || ||||||||| |||||| ||||||||||||||    
T  8675425 aaagtaaaaagtaatgtgagtatgagagagaaaattgttgcaaaagttatcacaaaatggatgttcaaatatca 8675498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 21064218 - 21064291
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || |  || ||||| |||  ||||||||||||||||||||    
T  21064218 aaagtaaaaagtaatgtgagtatgagagagaaagttgttgcaaaagttgtcactaaatgaatgttcaaatatca 21064291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 41175698 - 41175771
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || ||||| ||||||||  |||||  ||||||||||||||    
T  41175698 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttatcccaaaatagatgttcaaatatca 41175771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 54769 - 54709
Alignment:
Q  26 aatgcgagtatgaaagagaaattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||| |||||||| ||| ||||||||| | ||||| ||| ||||||| |||||||||||||    
T  54769 aatgagagtatgagagaaaaattatcataaaagttgtcaaaaaatgattgttcaaatatca 54709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 33125317 - 33125388
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||||||| ||||| ||||| || ||||||||||||| ||||||||||||||    
T  33125317 aaagtaaaaagtaatgtgagtatgaaaga-aaattgtcacaaaaattatcataaaatggatgttcaaatatca 33125388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 10890038 - 10890111
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  10890038 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 10890111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 13489741 - 13489668
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  13489741 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 13489668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 15705054 - 15705127
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  15705054 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 15705127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 34254343 - 34254416
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||| ||| || ||||| ||||| |||||||||||||||||||||||||    
T  34254343 aaagtaaaaagtaatgtgagtatgagagataaagttgtcacagaagttgtcataaaatgaatgttcaaatatca 34254416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 32915064 - 32915137
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||  ||||||||||||||    
T  32915064 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatca 32915137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 52362561 - 52362488
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  52362561 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 52362488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 51286351 - 51286432
Alignment:
Q  4 agagagataaaaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||||  |||||| ||||| |||||||| ||||||| || ||||| ||||| ||||||||| |||||||||||||||    
T  51286351 agagagataaaa--taaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaataaatgttcaaatatca 51286432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 32926307 - 32926265
Alignment:
Q  44 aaattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  32926307 aaattatcacaaaagttatcataaaatgattgttcaaatatca 32926265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 46543434 - 46543507
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| || || |||||||| ||||||| |||||||| |  ||||||||||||| ||||||||||||||    
T  46543434 aaagtaaaaaatagtgtgagtatgagagagaaaattatcacaaagattatcataaaatggatgttcaaatatca 46543507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 47214287 - 47214214
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || ||||| ||||| |||||||||  ||||||||||||||    
T  47214287 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatca 47214214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 21340601 - 21340530
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatat 84  Q
    |||||||||||||||| |||||||||||||||| || |  || ||||| |||  ||||||||||||||||||    
T  21340601 aaagtaaaaagtaatgtgagtatgaaagagaaagttgttgcaaaagttgtcactaaatgaatgttcaaatat 21340530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 37275025 - 37275098
Alignment:
Q  14 aaagtaaaaag-taatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||| ||||| |||||||||||||||| |||||||| ||||||| | ||||||  |||||||||||||    
T  37275025 aaagtaaaaagataatgtgagtatgaaagagaaagttatcacaaaagttat-aaaaaatggttgttcaaatatca 37275098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 16987017 - 16986944
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || |||||  | ||||||  ||||||||||||||||||||    
T  16987017 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaataattatcaccaaatgaatgttcaaatatca 16986944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 33054080 - 33054153
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || |  || ||||| ||| |||||||||||||||||||||    
T  33054080 aaagtaaaaaataatgtgagtatgagagagaaagttgtagcaaaagttgtcacaaaatgaatgttcaaatatca 33054153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 34008259 - 34008186
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| | ||||| || ||||| ||||| |||||||||  ||||||||||||||    
T  34008259 aaagtaaaaaataatgtgagtatgagatagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatca 34008186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 36577404 - 36577477
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || |  || ||||| ||| |||||| ||||||||||||||    
T  36577404 aaagtaaaaagtaatgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaatggatgttcaaatatca 36577477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 37588667 - 37588740
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| | ||| |||||||||||||||| || | ||| ||||| ||| ||||| |||||||||||||||    
T  37588667 aaagtaaaaaattatgtgagtatgaaagagaaagttgtaacaaaagttgtcacaaaataaatgttcaaatatca 37588740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 44789135 - 44789208
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| | ||| |||||||||||||||| || | ||| ||||| ||| |||||| ||||||||||||||    
T  44789135 aaagtaaaaaatgatgtgagtatgaaagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatca 44789208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 52714893 - 52714966
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||| | |||||||| | ||||| || ||||| ||||| | |||||||| ||||||||||||||    
T  52714893 aaagtaaaaagtaacgtgagtatgagaaagaaaattgtcacaaaagttgttataaaatggatgttcaaatatca 52714966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 47820510 - 47820566
Alignment:
Q  31 gagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||    
T  47820510 gagtatgaaagagaaagttgtaacaaaagttgtcataaaatggatgttcaaatatca 47820566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 18141293 - 18141366
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||||||||| ||||||||    
T  18141293 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatgaatgtttaaatatca 18141366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 20822860 - 20822933
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  20822860 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 20822933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 6531175 - 6531248
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || || |||||||| ||| |||||| ||||||||||||||    
T  6531175 aaagtaaaaaataatgtgagtatgagagagaaagttgtcccataagttgtcacaaaatggatgttcaaatatca 6531248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 32459514 - 32459582
Alignment:
Q  19 aaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||| || ||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  32459514 aaaaagtaatgtgaatatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 32459582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 28944971 - 28945042
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatat 84  Q
    |||||||||| |||||  ||||||||||||||| |||| ||| ||||||||| |||||| || |||||||||    
T  28944971 aaagtaaaaaataatgttagtatgaaagagaaagttataacaaaagttatcacaaaatggatattcaaatat 28945042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 754430 - 754503
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||| ||| || |  || ||||| ||| |||||||||||||||||||||    
T  754430 aaagtaaaaagtaatgtgagtatgagagaaaaagttgttgcaaaagttgtcacaaaatgaatgttcaaatatca 754503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 24842446 - 24842374
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaat-tatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| |||||||  | ||||| ||||| |||| ||||||||||||||||||||    
T  24842446 aaagtaaaaa-taatgtgagtatgagagagaaagctgtcacaaaagttgtcattaaatgaatgttcaaatatca 24842374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 33421839 - 33421766
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| | ||| |||||||||||||||| || | ||| ||||| ||| |||||| ||||||||||||||    
T  33421839 aaagtaaaaaatgatgtgagtatgaaagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatca 33421766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 35213553 - 35213626
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || | ||| ||||| ||| |||||  ||||||||||||||    
T  35213553 aaagtaaaaagtaatgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatagatgttcaaatatca 35213626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 34037041 - 34036985
Alignment:
Q  31 gagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| || ||||||  ||||| ||||||||||||||    
T  34037041 gagtatgaaagagaaagttatcacaaaaattatcaccaaatggatgttcaaatatca 34036985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 34057945 - 34058018
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||| | |||||||| ||||||| || ||||| |||||||||||||||| ||||||||||||||    
T  34057945 aaagtaaaaagtaacgtgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatca 34058018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 55400078 - 55400005
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  55400078 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 55400005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 24095398 - 24095471
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || ||||| || ||||||||||||| ||||||||||||||    
T  24095398 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaaattatcataaaatggatgttcaaatatca 24095471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 3953469 - 3953540
Alignment:
Q  16 agtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||| |||||||| ||||||| || ||||| || ||||||||||| | ||||||||||||||    
T  3953469 agtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaaattatcataaaagggatgttcaaatatca 3953540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 39697214 - 39697287
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || | ||| || |||||| |||||| ||||||||||||||    
T  39697214 aaagtaaaaagtaatgtgagtatgagagagaaagttgttacaaaaattatcacaaaatggatgttcaaatatca 39697287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 49417662 - 49417581
Alignment:
Q  4 agagagataaaaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||||  |||||| ||||| |||||||| ||||||| || ||||| ||||| |||||||||  ||||||||||||||    
T  49417662 agagagataaaa--taaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatca 49417581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 44910764 - 44910703
Alignment:
Q  25 taatgcgagtatgaaagagaa-attatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||| |||||||| |||||| ||||| ||| ||||||||||||||||||||| |||||||||    
T  44910764 taatgtgagtatgagagagaagattat-acaaaagttatcataaaatgaatgtacaaatatca 44910703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 21196203 - 21196130
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| |||||  ||||||| ||||||| || ||||| ||||| ||| |||||| ||||||||||||||    
T  21196203 aaagtaaaaaataatgtaagtatgagagagaaagttgtcacagaagttgtcacaaaatggatgttcaaatatca 21196130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 22371270 - 22371197
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| |||||  ||||||| ||||||| |||| ||| |||||||||  ||||| ||||||||||||||    
T  22371270 aaagtaaaaaataatgtaagtatgagagagaaaattattacaaaagttatcactaaatggatgttcaaatatca 22371197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 24482955 - 24483028
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || |  || ||||| ||| |||||| ||||||||||||||    
T  24482955 aaagtaaaaagtaatgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaatggatgttcaaatatca 24483028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 31376757 - 31376830
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| | ||| |||||||||||||||| || | ||| ||||| ||| |||||| ||||||||||||||    
T  31376757 aaagtaaaaaattatgtgagtatgaaagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatca 31376830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 32759884 - 32759964
Alignment:
Q  6 agagataaaaagtaaaaagtaatgcgagtatgaaagagaaattatcacataagttat-cataaaatgaatgttcaaatatca 86  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||  | || || ||||  | |||||||||||||||||||||    
T  32759884 agagatataaagtaaaaa-taatgtgagtatgaaagagaaattgactcacaaattataaaaaaaatgaatgttcaaatatca 32759964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 37508490 - 37508563
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || |  || |||||||||  ||||| ||||||||||||||    
T  37508490 aaagtaaaaagtaatgtgagtatgagagagaaagttgttgcaaaagttatcactaaatggatgttcaaatatca 37508563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 42683906 - 42683833
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||  ||||| | |||||||||||||| || | ||| || |||||| |||||||||||||||||||||    
T  42683906 aaagtaaaagataatgtgggtatgaaagagaaaattgtaacaaaaattatcacaaaatgaatgttcaaatatca 42683833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 43905052 - 43904979
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || | ||| || ||||||  ||||| ||||||||||||||    
T  43905052 aaagtaaaaagtaatgtgagtatgagagagaaagttgttacaaaaattatcactaaatggatgttcaaatatca 43904979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 46019541 - 46019468
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| ||  |||||  ||||||||||||||    
T  46019541 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcgcaaaatagatgttcaaatatca 46019468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 46852124 - 46852196
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||  |||||||| ||||||| || ||||| ||| |||||| ||||| ||||||||||||||    
T  46852124 aaagtaaaaagtaatatgagtatgagagagaaagttgtcacaaaagctatcat-aaatggatgttcaaatatca 46852196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 50206962 - 50207035
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || |  || ||||| ||| |||||| ||||||||||||||    
T  50206962 aaagtaaaaagtaatgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaatggatgttcaaatatca 50207035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 6999243 - 6999175
Alignment:
Q  19 aaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||| ||||| ||||| || ||| ||| |||| ||| ||||| |||||||||||||||||||||||||    
T  6999243 aaaaaataatgtgagtaagagagaaaaagttattacagaagttgtcataaaatgaatgttcaaatatca 6999175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 6999060 - 6999133
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  6999060 aaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 6999133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 9634428 - 9634501
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||| ||| || ||||| || ||||||||||||| ||||||||||||||    
T  9634428 aaagtaaaaagtaatgtgagtatgagagaaaaagttgtcacaaaaattatcataaaatggatgttcaaatatca 9634501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 15269940 - 15269867
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| || ||||||||||||| || ||||| || || |||||||||| ||||||||||||||    
T  15269940 aaagtaaaaagtaatgtgaatatgaaagagaaagttgtcacaaaaattgtcataaaatggatgttcaaatatca 15269867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 32869905 - 32869832
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| |||||  | ||||||||||||| || ||||| || ||||||||||||||||||||||||||||    
T  32869905 aaagtaaaaaataatgtaaatatgaaagagaaagttgtcacaaaaattatcataaaatgaatgttcaaatatca 32869832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 2563783 - 2563710
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||| ||||  ||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  2563783 aaagtaaaaagaaatgtaagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 2563710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 6170709 - 6170636
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||| | |||||||| ||||||| || ||||| ||||| |||||||||| ||||| ||||||||    
T  6170709 aaagtaaaaagtaacgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttgaaatatca 6170636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 13765479 - 13765406
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||||||   |||||||| ||||||| || ||||| ||||| |||||||||| ||||||||||||||    
T  13765479 aaagtaaaaagtaacatgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 13765406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 14233711 - 14233784
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||  |||||||| ||||||| || ||||| ||||| ||| |||||| ||||||||||||||    
T  14233711 aaagtaaaaagtaatatgagtatgagagagaaatttgtcacaaaagttgtcacaaaatggatgttcaaatatca 14233784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 20911862 - 20911807
Alignment:
Q  31 gagtatgaaagagaaattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||| ||||||||||||||| ||||| | |  ||||||||||||||||||||    
T  20911862 gagtatgagagagaaattatcacaaaagttgttaccaaatgaatgttcaaatatca 20911807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 37105702 - 37105647
Alignment:
Q  32 agtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||||||| || ||||| || ||||||||||||| ||||||||||||||    
T  37105702 agtatgaaagagaaagttgtcacaaaaattatcataaaatggatgttcaaatatca 37105647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 26206926 - 26206853
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| |||| ||| || || |||||||||  ||||||||||||||    
T  26206926 aaagtaaaaaataatgtgagtatgagagagaaagttataacaaaaattgtcataaaatagatgttcaaatatca 26206853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 35589379 - 35589452
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagag-aaattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| |||| ||||| |  || ||||| ||| |||||| ||||||||||||||    
T  35589379 aaagtaaaaagtaatgtgagtatgagagagaaaattgttgcaaaagttgtcacaaaatggatgttcaaatatca 35589452  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 39449109 - 39449182
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| | ||| |||||||||||||||| || | ||| ||||| ||| |||||| ||||||||||||||    
T  39449109 aaagtaaaaaatgatgtgagtatgaaagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatca 39449182  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 44254678 - 44254605
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| |||| ||||||||| ||||||| || | ||| ||||| ||| | |||||||||||||||||||    
T  44254678 aaagtaaaaaataatacgagtatgagagagaaagttgtaacaaaagttgtcacagaatgaatgttcaaatatca 44254605  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 38257304 - 38257356
Alignment:
Q  32 agtatgaaagagaaattatcacataagttatcataaaatgaatgttcaaatat 84  Q
    ||||| ||| ||||||||||||  || |||||||||||||||||| |||||||    
T  38257304 agtataaaaaagaaattatcactaaaattatcataaaatgaatgtacaaatat 38257356  T

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Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 38504 - 38433
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatat 84  Q
    |||||||||||||| | |||||||| | ||||| || ||||| ||||| |||||||||||||||||||||||    
T  38504 aaagtaaaaagtaacgtgagtatgagaaagaaagttgtcacaaaagttgtcataaaatgaatgttcaaatat 38433  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 4658255 - 4658328
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    ||||||||||||||||  ||||||| ||| ||| || ||||| ||||| |||||||||| ||||||||||||||    
T  4658255 aaagtaaaaagtaatgtaagtatgagagaaaaagttgtcacaaaagttgtcataaaatggatgttcaaatatca 4658328  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 9549191 - 9549264
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || ||||| ||||| ||| |||||| ||||||||||||||    
T  9549191 aaagtaaaaaataatgtgagtatgagagagaaaattgtcacaaaagttgtcacaaaatggatgttcaaatatca 9549264  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 23793082 - 23793155
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||  || ||||||||||| ||| |||||| ||||||||||||||    
T  23793082 aaagtaaaaaataatgtgagtatgagagagaatgttgtcacataagttgtcacaaaatggatgttcaaatatca 23793155  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 31597027 - 31596954
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagaga-aattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||| | || ||||| || || |||||||||| ||||||||||||||    
T  31597027 aaagtaaaaagtaatgtgagtatgagagagagagttgtcacaaaaattgtcataaaatggatgttcaaatatca 31596954  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 8671559 - 8671621
Alignment:
Q  25 taatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||| ||||||| |||| ||| ||||||| |||||||| ||||| ||||||||    
T  8671559 taatgcgagtatgagagagaaagttattacaaaagttattataaaatggatgtttaaatatca 8671621  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 12707224 - 12707155
Alignment:
Q  18 taaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| | |||||||| ||||||| || || || ||||| |||||||||| ||||||||||||||    
T  12707224 taaaaagtaacgtgagtatgagagagaaagttgtcgcaaaagttgtcataaaatggatgttcaaatatca 12707155  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 16872148 - 16872221
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| |||||||| ||||||| || |  || ||||| ||| |||||| ||||||||||||||    
T  16872148 aaagtaaaaagtaatgtgagtatgatagagaaagttgttgcaaaagttgtcacaaaatggatgttcaaatatca 16872221  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 29991491 - 29991418
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| | ||| |||||||||||||||| || | ||| ||||| ||| |||||| ||||||||||||||    
T  29991491 aaagtaaaaaatgatgtgagtatgaaagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatca 29991418  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 34718194 - 34718121
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || | ||| ||||| ||| |||||| ||||||||||||||    
T  34718194 aaagtaaaaaataatgtgagtatgagagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatca 34718121  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 36110217 - 36110144
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagag-aaattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| ||||||||||||| ||||| |  || ||||| |||  ||||| ||||||||||||||    
T  36110217 aaagtaaaaagtaatgtgagtatgaaagagaaaattgttgcaaaagttttcactaaatggatgttcaaatatca 36110144  T

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Target: scaffold0532 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 11043 - 10970
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||| ||||| |||||||| ||||||| || ||||| ||||| ||  |||||| ||||||||||||||    
T  11043 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcccaaaatggatgttcaaatatca 10970  T

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Target: scaffold0471 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 86 - 13
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagag-aaattatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||| ||||||||||||| ||||| |  || ||||| |||  ||||| ||||||||||||||    
T  86 aaagtaaaaagtaatgtgagtatgaaagagaaaattgttgcaaaagttttcactaaatggatgttcaaatatca 13  T

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Target: scaffold0221 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 8293 - 8220
Alignment:
Q  14 aaagtaaaaagtaatgcgagtatgaaagagaaa-ttatcacataagttatcataaaatgaatgttcaaatatca 86  Q
    |||||||||||||||  || ||||| ||||||| || |  || ||||| |||||||||||||||||||||||||    
T  8293 aaagtaaaaagtaatatgaatatgagagagaaagttgttgcaaaagttgtcataaaatgaatgttcaaatatca 8220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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