View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16367_high_4 (Length: 441)
Name: NF16367_high_4
Description: NF16367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16367_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 181 - 439
Target Start/End: Complemental strand, 51527066 - 51526814
Alignment:
| Q |
181 |
tttaaaacggcagtgctatatgtagtgaatcatcatttctctcgctagattcagcattattcattttaaaattcacacacacgcatatgcatatacagaa |
280 |
Q |
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| T |
51527066 |
tttaaaacggcagtgctatatgtagcgaatcatcatttctcttgctagattcagcattattcattttaaaattcacacacacgcatat------acagaa |
51526973 |
T |
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| Q |
281 |
gtatgttgaagatcatgctcaaatttttgccaagtacttagaataaacttgaatgtgaatgtgtccctcttgttgcacagagttggctcttttgaatgtg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51526972 |
gtatgttgaagatcatgctcaaatttttgccaagtacttagaataaacttgaatgtgaatgtgtccctcttgttgcacagagttggctcttttgaatgtg |
51526873 |
T |
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| Q |
381 |
aactgaaaacatccaataatcaagtgctaattaattggggttaacagtaacccgtgtcc |
439 |
Q |
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| T |
51526872 |
aactgaaaacatccaataatcaagtgctaattaactggggttaacagtaacccgtgtcc |
51526814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 51527254 - 51527131
Alignment:
| Q |
20 |
tgccaccatgccgtccacgcctaattaataaacaatctccttcaacagattaaattttgccaaatgctcaatctcatcaatgttattaagatcaaatctc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51527254 |
tgccaccatgccgtccacgcctaattaataaacaatctccttcaacagattaaattttgccaaatgctcaatctcatcaatgttattaagatcaaatctc |
51527155 |
T |
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| Q |
120 |
tctaatacatgaatatgtcgatcg |
143 |
Q |
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|||| ||||||||||||||||||| |
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| T |
51527154 |
tctagtacatgaatatgtcgatcg |
51527131 |
T |
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