View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16367_high_6 (Length: 312)
Name: NF16367_high_6
Description: NF16367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16367_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 38846272 - 38846577
Alignment:
| Q |
7 |
ccacttatcaatacaaaccacgtggaaatgatgattgcattttggtaggaaccttatctggtctccattacagaattcagctaaacaaattacacaacta |
106 |
Q |
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| T |
38846272 |
ccacttatcaatacaaaccacatggaaatgatgattgcattttggtaggaaccttatctggtctccattacagaactcagctaaacaaattacacaacta |
38846371 |
T |
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| Q |
107 |
gaagttgaagatggagaacctgagtcatgagtactatatgttgaagttggtaaagccaccatttcttttttcttgattccggaattcaacctcctagaag |
206 |
Q |
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| T |
38846372 |
gaagttgaagatggagaacctgagtcatgagtactaaatgttgaagttggtaaagccaccatttcttttttcttgattccggaattcaacctcctagaag |
38846471 |
T |
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| Q |
207 |
caatccattgcataggctcagtaactacacgaccaagacattgaaaagcacattgtaacattgtgttaagaccaagagcacaaacaatggcacataaaat |
306 |
Q |
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| T |
38846472 |
caatccattgcataggctcagtaactacacgaccaagacattgaaaagcacattgtaacattgtgttaagaccaagagcacaaacaatggcacataaaat |
38846571 |
T |
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| Q |
307 |
ggctgc |
312 |
Q |
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| T |
38846572 |
ggctgc |
38846577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 45243471 - 45243342
Alignment:
| Q |
9 |
acttatcaatacaaaccacgtggaaatgatgattgcattttggtaggaaccttatctggtctccattacagaattcagctaaacaaattacacaactaga |
108 |
Q |
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| T |
45243471 |
acttatcaatacaaaccacatggaaatgatgattgcatttcggcaggaaccttatctggtctccattacagaattcagctaaacaaatgacacaactaaa |
45243372 |
T |
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| Q |
109 |
agttgaagatggagaacctgagtcatgagt |
138 |
Q |
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| T |
45243371 |
agttgaggatggagaacctgagtcacgagt |
45243342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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