View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16367_high_9 (Length: 210)
Name: NF16367_high_9
Description: NF16367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16367_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 55331211 - 55331405
Alignment:
| Q |
1 |
ttgttcctccgcgagttgcgaaggttgaattttgttcatgataagaagtatacttgtagctgcagaaaataaaagtgcggatgatagtttaagagccaaa |
100 |
Q |
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| T |
55331211 |
ttgttcttccgcgagttgcgaaggctgaattttgttcataataagaagtatacttgtagctgcagaaaataaaagtgtggatgatagtttaagagccaaa |
55331310 |
T |
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| Q |
101 |
agtggggtgccaatagcaccacttgcggccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgttgtttagaagtaggttgtt |
195 |
Q |
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| T |
55331311 |
agtggggtgccaatagcaccacttgcagccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgttgtttagaagtaggttgtt |
55331405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 55336650 - 55336843
Alignment:
| Q |
2 |
tgttcctccgcgagttgcgaaggttgaattttgttcatgataagaagtatacttgtagctgcagaaaataaaagtgcggatgatagtttaagagccaaaa |
101 |
Q |
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| T |
55336650 |
tgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacataccagttgctgctgaaaacagaagagtggatgatagtttcagagccaaca |
55336749 |
T |
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| Q |
102 |
gtggggtgccaatagcaccacttgcggccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgttgtttagaagtaggttgtt |
195 |
Q |
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| T |
55336750 |
gttgtgcaccatcagcaccagttgcggctgcaatacaagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgtt |
55336843 |
T |
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