View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16367_low_4 (Length: 457)
Name: NF16367_low_4
Description: NF16367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16367_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Original strand, 46038095 - 46038541
Alignment:
| Q |
15 |
actaagcaatcaaacatcaatataataatggaatatgaaacagcaagagtctaataaatcctcctcgcagctgcaacctttctcactgatattccccatt |
114 |
Q |
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| T |
46038095 |
actaagcaatcaaacatcaatataata-tggaatatgaaacagcaagagtctaataaatcctcctcgcagctgcaacctttctcactgatattccccatt |
46038193 |
T |
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| Q |
115 |
tgataacagcccgaatcttacaccacactgcttttgatttcccgctgcctaatatctccatagcagaattaaggaattcaacatcaagacaatcaaattc |
214 |
Q |
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| T |
46038194 |
tgataacagcccgaatcttacaccacactgcttttgatttcccgctgcttaatatctccatagcagaattaaggaattcaacatcaagaaaatcaagttc |
46038293 |
T |
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| Q |
215 |
ccatgttgt---------------------aagattctctattgaatgaccaccttgtgtaactggaaagcgtgatccatgactatctccctcgatgtac |
293 |
Q |
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| T |
46038294 |
ccatgttgtatcaagaggaggaaaatttgtaagattctctattgaatgaccaccttgtgtaactggaaagcgtgatccatgactatctccctcgatgtac |
46038393 |
T |
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| Q |
294 |
atttcagctcccacatgattgttttgtggtatgtctcttatgtctggcactggttcaggattgatttggtaatcatgcattccttcgttaacatatgaag |
393 |
Q |
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| T |
46038394 |
atttcagctcccacatgattgttttgtggtatgtctcttatgtctggcactggttcaggattgatttggtaatcatgcattccttcgttaacatatgaag |
46038493 |
T |
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| Q |
394 |
tagacatacatggttgaacataaccttgccctatatctgtttgacctg |
441 |
Q |
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| T |
46038494 |
tagacatacatggttgaacataaccttgccctatatctgtttgacctg |
46038541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 254 - 441
Target Start/End: Original strand, 46030235 - 46030422
Alignment:
| Q |
254 |
aactggaaagcgtgatccatgactatctccctcgatgtacatttcagctcccacatgattgttttgtggtatgtctcttatgtctggcactggttcagga |
353 |
Q |
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| T |
46030235 |
aactggaaaatgtgatccataaccatccccatcaatgtacatttcaccttccacgtgattgttttgtggtatttctcttatgtctggcattggatcaaca |
46030334 |
T |
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| Q |
354 |
ttgatttggtaatcatgcattccttcgttaacatatgaagtagacatacatggttgaacataaccttgccctatatctgtttgacctg |
441 |
Q |
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| T |
46030335 |
tagatctggtaattatccattccctcattaacatatgaagtagagatacatggttgaacataactttgcccaatttctttttgacctg |
46030422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 46030002 - 46030104
Alignment:
| Q |
81 |
gcagctgcaacctttctcactgatattccccatttgataacagcccgaatcttacaccacactgcttttgatttcccgctgcctaatatctccatagcag |
180 |
Q |
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|||||||||||| |||| | |||||| ||||||||||| || || || |||||||||||||||||||||||| | |||| | |||| ||||||| || |
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| T |
46030002 |
gcagctgcaacccttcttattgatatgacccatttgatagcaatcccaaccttacaccacactgcttttgatttatcactgcttgatatatccatagaag |
46030101 |
T |
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| Q |
181 |
aat |
183 |
Q |
| |
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||| |
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| T |
46030102 |
aat |
46030104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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