View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16367_low_6 (Length: 379)
Name: NF16367_low_6
Description: NF16367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16367_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 23596321 - 23596669
Alignment:
| Q |
19 |
tagaagcctgagcatacccccttgcaaatctgaacagcccacttccacccacaaccggcatctctctcacggcggattcaattgtattcctgcccaaaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |
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| T |
23596321 |
tagaagcctgagcatacccccttgcaaatctgaacagcccactaccacccacaaccggcatctctctcacggcggattcgatcgtattccttcccaaaat |
23596420 |
T |
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| Q |
119 |
actgagattacttccattgtacttcccttgtgtgaaagcaaaattaagcaccatgagaaacccaacttcactttgtgaagctgaagcatagattccttgt |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23596421 |
actgagattacttccattatacttcccttgtgtgaaagcaaagttaagcaccatgagaaacccaacttcactttgtgaagctgaagcatagattccttgt |
23596520 |
T |
|
| Q |
219 |
gctcttcccacaacttcggaatttgactccggacgggctgttaacgggtcgtccatcataaccactgaaccaaaacccgtgggggatttttcagtggttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23596521 |
gctcttcccacaacttcggaatttgactccggacgggctgttaacgggtcgtccatcataaccactgaaccaaaacccgtgggggatttttcagtggttg |
23596620 |
T |
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| Q |
319 |
gagatgaggcgacccggacagcagtttggttttttccgccgatgatgtc |
367 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23596621 |
gagatgaggcgacccggacagcggtttggttttttccgccgatgatgtc |
23596669 |
T |
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