View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16368_high_3 (Length: 513)

Name: NF16368_high_3
Description: NF16368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16368_high_3
NF16368_high_3
[»] chr3 (24 HSPs)
chr3 (19-504)||(19857611-19858117)
chr3 (19-348)||(19853230-19853557)
chr3 (19-302)||(24840047-24840328)
chr3 (19-320)||(19943465-19943765)
chr3 (119-360)||(19950830-19951070)
chr3 (132-348)||(19989240-19989455)
chr3 (167-288)||(19838162-19838282)
chr3 (167-288)||(19955853-19955973)
chr3 (167-348)||(20016419-20016599)
chr3 (169-348)||(19811998-19812176)
chr3 (120-294)||(26646782-26646955)
chr3 (167-348)||(19818275-19818455)
chr3 (169-334)||(26651765-26651929)
chr3 (19-64)||(19838393-19838438)
chr3 (19-64)||(19848990-19849035)
chr3 (19-64)||(19956084-19956129)
chr3 (19-64)||(20036676-20036721)
chr3 (228-312)||(20036887-20036970)
chr3 (19-64)||(19951124-19951169)
chr3 (27-64)||(20046123-20046160)
chr3 (110-178)||(20005163-20005231)
chr3 (167-260)||(19848792-19848885)
chr3 (193-302)||(20005231-20005339)
chr3 (19-64)||(26647004-26647049)
[»] chr5 (5 HSPs)
chr5 (167-348)||(9814755-9814935)
chr5 (168-360)||(26355148-26355339)
chr5 (19-64)||(9815037-9815082)
chr5 (19-64)||(26355000-26355045)
chr5 (197-290)||(38435381-38435473)
[»] chr1 (1 HSPs)
chr1 (168-318)||(1716962-1717111)
[»] chr8 (3 HSPs)
chr8 (19-64)||(22652161-22652206)
chr8 (167-218)||(11564354-11564405)
chr8 (167-313)||(22652308-22652453)
[»] chr4 (2 HSPs)
chr4 (19-64)||(6397811-6397856)
chr4 (19-64)||(6398261-6398306)
[»] chr6 (1 HSPs)
chr6 (126-208)||(34408266-34408348)
[»] chr7 (3 HSPs)
chr7 (27-64)||(12496285-12496322)
chr7 (27-64)||(12520150-12520187)
chr7 (27-64)||(12580439-12580476)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 19858117 - 19857611
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19858117 cttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgt 19858018  T
Q  119 tgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctc 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19858017 tgatgagcttctgttccacatcttgcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctc 19857918  T
Q  219 tatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19857917 tatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattat 19857818  T
Q  319 gcggcatttagtactcctaatagcatcaaaaatttcagc---------------------ttttggttgaagttggtcaacccacttaacccattgtgtg 397  Q
    |||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||    
T  19857817 gcggcatttagtactcctaatagcatcaaaaatttcagctttcttccacacagattcatattttggttgaagttggtcaacccacttaacccattgtgtg 19857718  T
Q  398 cgtgggttaccaaattcttaaaacaaacaaaccatatttggatgctttcagacatatattaattgctaatttgatatggattatttataatgtaaaggaa 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19857717 cgtgggttaccaaattcttaaaacaaacaaaccatatttggatgctttcagacatatattaattgctaatttgatatggattatttataatgtaaaggaa 19857618  T
Q  498 gtataat 504  Q
    |||||||    
T  19857617 gtataat 19857611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 19853557 - 19853230
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgt 118  Q
    ||||||| |||||||||||||||||| | | ||||| |  ||||||||| | |||||||||||  | || ||||||||| ||||||||||  ||||||||    
T  19853557 cttcatgttcaatttcactacctttaccaaagaaaaaagtcatccacacagatgtggaaggtggca-tagttttgataaccctctccttttcttcaatgt 19853459  T
Q  119 tgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctc 218  Q
    ||||||||||||| ||||  |||||||||  ||||||||| |||| |||||||| ||||||||||| || || ||||||||||||||||| |||||||||    
T  19853458 tgatgagcttctgctccaactctttcattctctgatcttcaagtgatttgaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctc 19853359  T
Q  219 tatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattat 318  Q
     | ||| ||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||| | | ||||||| |||||||| ||||    
T  19853358 caaagttattgttgcttcaccaaatgggaacacaaatgtatt-ggtctcagaacaccatttgtcaacaaccccacataacaagttttgatctttctttat 19853260  T
Q  319 gcggcatttagtactcctaatagcatcaaa 348  Q
    || ||  ||||||||| |||||||||||||    
T  19853259 gcagctcttagtactcataatagcatcaaa 19853230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 24840047 - 24840328
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgt 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||  |   |||| || ||||||||| |   |||||||||    
T  24840047 cttcatgctcaacttcactacctttatcgatgaaaatatccatccacactgatgtagaaggtgccatacctttcga-aatcctctcttggctttcaatgt 24840145  T
Q  119 tgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctc 218  Q
    ||||||||||||||||||| ||| |||| || |||||||| ||  |   ||||||||||  ||||||||||||||| ||||||||||| |  ||||||||    
T  24840146 tgatgagcttctgttccacctctctcatctcttgatcttcaaggtgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctc 24840245  T
Q  219 tatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagt 302  Q
     | ||| |||||||||||||||||  |||||||||| || ||  || ||| |||||||||| |||||||||||| |||||||||    
T  24840246 caaagtgattgttgcttcaccaaatagaaacacgaaggtgtt-tgtttcacaacaccatttctcaacaaccccacaaaccaagt 24840328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 19943765 - 19943465
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgt 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  |   ||||||| |||| |||| |   ||||||||     
T  19943765 cttcatgttcaatttcactacctttatcgatgaaaatatccatccacactgatgtggaaggggccataccttttga-aatcatctcttggctttcaatgc 19943667  T
Q  119 tgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaa-caggatcaccaaagagagagtaaccccccaaaaccacaacatcct 217  Q
    ||||||||||||||||||| | | | || ||||||||||| ||| |  |||||| |||||| ||||||||||||||| ||||||||||| |  ||||| |    
T  19943666 tgatgagcttctgttccacctttctaatctcctgatcttcaagttgggtgaaaaacaggatgaccaaagagagagtatccccccaaaacaatgacatctt 19943567  T
Q  218 ctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcatta 317  Q
    | | ||| |||||||||||||||||  ||||||| || || ||  || ||| |||||||||| ||||||| |||| ||||||||| | ||| ||| ||||    
T  19943566 ccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtt-tgtttcacaacaccatttctcaacaatcccacaaaccaagtcttgatttttaatta 19943468  T
Q  318 tgc 320  Q
    |||    
T  19943467 tgc 19943465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 119 - 360
Target Start/End: Complemental strand, 19951070 - 19950830
Alignment:
Q  119 tgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctc 218  Q
    |||||||||| | ||| || ||||||||||| |||||||  ||||   ||||||||||||||||||  | || ||||||||||||||||| |||||||||    
T  19951070 tgatgagcttttcttcaacctctttcatttcttgatcttgaagtgtaatgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctc 19950971  T
Q  219 tatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattat 318  Q
     | ||| || ||||| |||||||| |||||||| |||||||| |||||||| ||||||||| |||||||||||| ||| ||||||  ||| |||   |||    
T  19950970 caaagtgatagttgcctcaccaaatggaaacacaaatgtatt-ggtctcagtacaccatttctcaacaaccccaaaaagcaagttatgatttttatgtat 19950872  T
Q  319 gcggcatttagtactcctaatagcatcaaaaatttcagcttt 360  Q
       || |||||||||| ||||||||||||| ||| |||||||    
T  19950871 tatgcttttagtactcataatagcatcaaagattccagcttt 19950830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 348
Target Start/End: Complemental strand, 19989455 - 19989240
Alignment:
Q  132 ttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgtt 231  Q
    |||||| ||||||||||| || ||||  ||||   ||||||||||||||||||  | || ||||||||| ||||||| |||||| || | ||| || |||    
T  19989455 ttccacctctttcatttcttggtcttgaagtgtaatgaaaacaggatcaccaagaatagggtaaccccctaaaaccataacatcttccaaagtgatagtt 19989356  T
Q  232 gcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagta 331  Q
    || |||||||| ||||| || ||||| ||  |||||| |||||||||| |||||||||||| | | ||||||  |||||||| ||||||  || || |||    
T  19989355 gcctcaccaaatggaaaaacaaatgtgtt-tgtctcacaacaccatttctcaacaaccccaaatagcaagttatgatctttctttatgcaacacttggta 19989257  T
Q  332 ctcctaatagcatcaaa 348  Q
    ||| ||||||| |||||    
T  19989256 ctcataatagcttcaaa 19989240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 19838282 - 19838162
Alignment:
Q  167 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 266  Q
    ||||||||| |||||||| || || |||||||||||||||||  ||||| || | ||| |||||||| |||||||| |||||||| |||||||| |||||    
T  19838282 tgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtatt-ggtct 19838184  T
Q  267 cagaacaccatttgtcaacaac 288  Q
    || | |||||||| ||||||||    
T  19838183 cacagcaccatttctcaacaac 19838162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 19955973 - 19955853
Alignment:
Q  167 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 266  Q
    ||||||||| |||||||| || || |||||||||||||||||  ||||| || | ||| |||||||| |||||||| |||||||| ||||||||  ||||    
T  19955973 tgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtatt-tgtct 19955875  T
Q  267 cagaacaccatttgtcaacaac 288  Q
    || |||||||||| ||||||||    
T  19955874 cacaacaccatttctcaacaac 19955853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 348
Target Start/End: Original strand, 20016419 - 20016599
Alignment:
Q  167 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 266  Q
    ||||||||||||| |||| || || |||||| |||||||||| || |||||| | ||| ||||| |||||| |||| |||||||| ||||||||  ||||    
T  20016419 tgaaaacaggatcgccaatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatt-tgtct 20016517  T
Q  267 cagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa 348  Q
     |||||||||||| ||  ||||| |||| | ||||||| ||| | ||| |||||| || || || ||| |||||||||||||    
T  20016518 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaa 20016599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 348
Target Start/End: Complemental strand, 19812176 - 19811998
Alignment:
Q  169 aaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctca 268  Q
    |||| ||||||||||| || || ||||||||||||||||| || |||||| | ||| || |||||||||||||| ||||| || || || ||  ||||||    
T  19812176 aaaataggatcaccaatgatagggtaaccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgtt-agtctca 19812078  T
Q  269 gaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa 348  Q
     |||||||||| |||||||||||| | | ||| ||| ||| ||| | |||| | || || |||||| |||||||||||||    
T  19812077 caacaccatttctcaacaaccccaaagagcaattttagatttttgagtatgtgacacttggtactcataatagcatcaaa 19811998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 294
Target Start/End: Complemental strand, 26646955 - 26646782
Alignment:
Q  120 gatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctct 219  Q
    |||||| |||| |||||| ||| ||||||| || ||||| ||||   ||||||||||||| ||||  | ||  ||||||||||||||||  | ||||||     
T  26646955 gatgagtttcttttccacctctctcatttcttggtcttcaagtgaaatgaaaacaggatccccaataataggataaccccccaaaaccatgatatcctcc 26646856  T
Q  220 atagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccata 294  Q
    | |||||| |||||||||||||||| || ||| || |||||  |||||| |||||||||| ||||| ||||||||    
T  26646855 aaagtaatagttgcttcaccaaaggcaatcacaaaggtatt-tgtctcacaacaccatttctcaactaccccata 26646782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 348
Target Start/End: Complemental strand, 19818455 - 19818275
Alignment:
Q  167 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 266  Q
    |||||||||||||||||| || ||  |||||||||||||| |  |||||||| | ||| || ||||| |||||||| ||||| || || || ||  ||||    
T  19818455 tgaaaacaggatcaccaatgataggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgtt-agtct 19818357  T
Q  267 cagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa 348  Q
    || |||||||||| |||||||||||| | | ||||||| ||| |||    |||  ||||||||||||| |||||||||||||    
T  19818356 cacaacaccatttctcaacaaccccaaatagcaagttttgatttttatgaatgtagcatttagtactcataatagcatcaaa 19818275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 334
Target Start/End: Complemental strand, 26651929 - 26651765
Alignment:
Q  169 aaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctca 268  Q
    |||||||||| ||||||||||||||| ||||||||||| |  |||||||| | ||| |||||||| |||||||| ||||| || || | | |  ||||||    
T  26651929 aaaacaggataaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaac-aaagcaatttgtctca 26651831  T
Q  269 gaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactc 334  Q
      ||||||||| |||  || |||||||||||||| | ||| |||||||| |||||  |||||||||    
T  26651830 ctacaccatttctcagaaatcccataaaccaagtcttgatttttcattacgcggctcttagtactc 26651765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 19838438 - 19838393
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||    
T  19838438 cttcatgttcaatttcgctacctttatcgatgaaaatatccatcca 19838393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 19849035 - 19848990
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  19849035 cttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19848990  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 19956129 - 19956084
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  19956129 cttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19956084  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 20036676 - 20036721
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  20036676 cttcatgttcaatttcactacctttatcaatgaaaatatccatcca 20036721  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 20036887 - 20036970
Alignment:
Q  228 tgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagtttggatcttt 312  Q
    ||||||||||||||||| |||||| ||||||||  ||||  ||||||||||| || ||||||||||| | ||||||| |||||||    
T  20036887 tgttgcttcaccaaaggaaaacacaaatgtatt-tgtcttggaacaccatttctccacaaccccatatagcaagttttgatcttt 20036970  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 19951169 - 19951124
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||    
T  19951169 cttcatgttcaatttcactacctttatcagtgaaaatatccatcca 19951124  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 20046160 - 20046123
Alignment:
Q  27 tcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20046160 tcaatttcactacctttatcgatgaacatatccatcca 20046123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 20005163 - 20005231
Alignment:
Q  110 tttcaatgttgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggat 178  Q
    |||||||||||| |||||||||||| || ||| |||| ||||||||||| ||| |  ||||||||||||    
T  20005163 tttcaatgttgacgagcttctgttcgacctctctcatctcctgatcttcaagttgggtgaaaacaggat 20005231  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 19848885 - 19848792
Alignment:
Q  167 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtatt 260  Q
    ||||||||||||||||||  | ||  |||||||| | |||||  | |||||| | ||| ||||||||||||||||||| |||||| || |||||    
T  19848885 tgaaaacaggatcaccaagaacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatt 19848792  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 302
Target Start/End: Original strand, 20005231 - 20005339
Alignment:
Q  193 taaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaacccca 292  Q
    |||||||||||||| |  ||||| || | ||| |||||||||||||||||  ||||||| || || ||  || ||| |||||||||| ||||||| ||||    
T  20005231 taaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtt-tgtttcacaacaccatttctcaacaatccca 20005329  T
Q  293 taaaccaagt 302  Q
     |||||||||    
T  20005330 caaaccaagt 20005339  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 26647049 - 26647004
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| |||||||||||||||||||| |||||| |||| |||||    
T  26647049 cttcatgttcaatttcactacctttatccatgaaactatcgatcca 26647004  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 167 - 348
Target Start/End: Complemental strand, 9814935 - 9814755
Alignment:
Q  167 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 266  Q
    |||||| ||||||||| | || ||  |||||||||||||||| ||||||||| | | |||| || || |||||||| |||||||| |||||||| | |||    
T  9814935 tgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcg-tct 9814837  T
Q  267 cagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa 348  Q
     | |||||||||| |||||||||||||| | ||||||| ||||||||||||||||||| || |||||| | |||||||||||    
T  9814836 tacaacaccatttctcaacaaccccatatagcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaa 9814755  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 360
Target Start/End: Original strand, 26355148 - 26355339
Alignment:
Q  168 gaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctc 267  Q
    ||||| ||||||||||| || || ||||||||| | ||||| ||||||||| | |   |  || || |||||||| |||||||| |||||||| | ||||    
T  26355148 gaaaataggatcaccaatgacagggtaacccccaagaaccataacatcctccaaacctaccgtcgcctcaccaaacggaaacacaaatgtattag-tctc 26355246  T
Q  268 agaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagcttt 360  Q
    | |||||||||| || |||||||| |||| ||||||| ||| ||||| |||||||||||| |||||| | ||||||||||||||  |||||||    
T  26355247 acaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatgcggcatttggtactcattatagcatcaaaaatcccagcttt 26355339  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 9815082 - 9815037
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||    
T  9815082 cttcatgctcaatttcactacctttgtcgatgaaaaaatccatcca 9815037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 26355000 - 26355045
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| |||| ||||||||||||||| ||||||| |||||||||    
T  26355000 cttcatgttcaacttcactacctttatccatgaaaacatccatcca 26355045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 38435381 - 38435473
Alignment:
Q  197 cccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccc 290  Q
    ||||||||||||  | ||| || | ||| ||||||||| ||||||  |||||||| |||||||| ||||| | |||||||||| ||||||||||    
T  38435381 cccccaaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtatt-ggtcttacaacaccatttctcaacaaccc 38435473  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 318
Target Start/End: Complemental strand, 1717111 - 1716962
Alignment:
Q  168 gaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctc 267  Q
    ||||||||||||||||| || || |||| |||| ||||||| || |||||| | ||| ||||| ||||||||||| |||||||| ||||||||  |||||    
T  1717111 gaaaacaggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatt-tgtctc 1717013  T
Q  268 agaacaccatttgtcaacaaccccataaaccaagtttggatctttcattat 318  Q
    | |||||||||| ||||||| |||||| | ||||||| ||| |||| ||||    
T  1717012 acaacaccatttttcaacaatcccatataacaagttttgatttttctttat 1716962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 22652161 - 22652206
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  22652161 cttcatgttcaatttcactacctttatcgatgaaaatatccatcca 22652206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 11564354 - 11564405
Alignment:
Q  167 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctc 218  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  11564354 tgaaaacaggatcaccaaaaagagagaaaccccccaaaaccataacatcctc 11564405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 22652308 - 22652453
Alignment:
Q  167 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 266  Q
    ||||||||||||||||||  | || ||||||| | |||| || |||||| ||||  || || ||||| |||||||| |||||||| |||| | |  ||||    
T  22652308 tgaaaacaggatcaccaagaacagggtaaccctctaaaatcataacatcttctaaggtgatagttgcctcaccaaatggaaacacaaatg-agtttgtct 22652406  T
Q  267 cagaacaccatttgtcaacaaccccataaaccaagtttggatctttc 313  Q
    || | |||||||| |||||||||||| | | ||||||  ||||||||    
T  22652407 cacagcaccatttctcaacaaccccaaatagcaagttatgatctttc 22652453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 6397811 - 6397856
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  6397811 cttcatgttcaatttcactacctttatcgatgaacatatccatcca 6397856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 6398306 - 6398261
Alignment:
Q  19 cttcatgctcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||| ||||||||||||||||||| ||| || |||||||||||    
T  6398306 cttcatgttcaatttcactacctttatagataaacatatccatcca 6398261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 34408266 - 34408348
Alignment:
Q  126 cttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaacca 208  Q
    |||||||||||| |||  |||||| |||||||| ||||   ||||||||||||| | |||| ||||||| ||| |||||||||    
T  34408266 cttctgttccacctctcccatttcttgatcttcaagtgtgctgaaaacaggatctcgaaagtgagagtatccctccaaaacca 34408348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 12496322 - 12496285
Alignment:
Q  27 tcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12496322 tcaatttcactacatttatcgatgaacatatccatcca 12496285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 12520187 - 12520150
Alignment:
Q  27 tcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12520187 tcaatttcactacatttatcgatgaacatatccatcca 12520150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 12580476 - 12580439
Alignment:
Q  27 tcaatttcactacctttatcgatgaaaatatccatcca 64  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12580476 tcaatttcactacatttatcgatgaacatatccatcca 12580439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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