View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16368_high_7 (Length: 226)
Name: NF16368_high_7
Description: NF16368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16368_high_7 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34721705 - 34721480
Alignment:
| Q |
1 |
taaaagttaatattactactcaatctgattcaacttgctgtcttttttggatgacgttgaatcaattgctctagaattgatcacttttcttaaaatactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34721705 |
taaaagttaatattactactcaatctgattcaacttgctgtcttttttggacgacgttgaatcaattgctctagaattgatcacttttcttaaaatactg |
34721606 |
T |
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| Q |
101 |
aaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctcgtaaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34721605 |
aaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctcgtaaaact |
34721506 |
T |
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| Q |
201 |
gcccaatcaagtcaatcagctttgtc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34721505 |
gcccaatcaagtcaatcagctttgtc |
34721480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34726833 - 34726608
Alignment:
| Q |
1 |
taaaagttaatattactactcaatctgattcaacttgctgtcttttttggatgacgttgaatcaattgctctagaattgatcacttttcttaaaatactg |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||| |
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| T |
34726833 |
taaaagttaatattaatactcaatctgattcaacttgctgtcttttttggatggtgttgaataaattgctctagaattgatcactttgcttaaaatgctg |
34726734 |
T |
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| Q |
101 |
aaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctcgtaaaact |
200 |
Q |
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| T |
34726733 |
aaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatcgtcaagct |
34726634 |
T |
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| Q |
201 |
gcccaatcaagtcaatcagctttgtc |
226 |
Q |
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| T |
34726633 |
gtccaatcaagccaatcggctttgtc |
34726608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 226
Target Start/End: Complemental strand, 38611434 - 38611301
Alignment:
| Q |
93 |
aaatactgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctc |
192 |
Q |
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|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || |
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| T |
38611434 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
38611335 |
T |
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| Q |
193 |
gtaaaactgcccaatcaagtcaatcagctttgtc |
226 |
Q |
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| T |
38611334 |
ctgaatctgtccaatcaagtcaatcagctttgtc |
38611301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38611506 - 38611445
Alignment:
| Q |
1 |
taaaagttaatattactactcaatctgattcaacttgctgtcttttttggatgacgttgaat |
62 |
Q |
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|||||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||| |
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| T |
38611506 |
taaaagttaatactactactcaatctgaataaacttgctgtcttttttggatggtgttgaat |
38611445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 34731006 - 34730961
Alignment:
| Q |
4 |
aagttaatattactactcaatctgattcaacttgctgtcttttttg |
49 |
Q |
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| T |
34731006 |
aagttaatattactactcagtctgattaaacttgctgtcttttttg |
34730961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 38495463 - 38495542
Alignment:
| Q |
99 |
tgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcg |
178 |
Q |
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||||||||||||||||| | |||||||||| || || | |||||||||||| ||||||||| | |||||||||||||| |
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| T |
38495463 |
tgaaggttccatgatctctcagagtttgatgataaaaaaagaagctgcagacgccgtctttcagatcacaatgcaaggcg |
38495542 |
T |
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