View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16369_high_4 (Length: 411)
Name: NF16369_high_4
Description: NF16369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16369_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 98 - 396
Target Start/End: Original strand, 32506043 - 32506341
Alignment:
| Q |
98 |
gagctaatgcaattataaaccaaacaaagttataaccctttttaattaattattcatcttcacaaaaccacaatcagttagtgtctttacacaatacgag |
197 |
Q |
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| T |
32506043 |
gagctaatgcaattataaaccaaacaaagttataaccctttttaattaattattcatcttcacaaaatcacaatcagttagtgtctttacacaatacgag |
32506142 |
T |
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| Q |
198 |
cagctgcataaattcacaatcccataaattcaagaatgaacaacaacaacaatttgtgaaagagggaggaaaataatggaaattgatccatcttcatccc |
297 |
Q |
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| T |
32506143 |
cagctgcataaattcacaaccccataaattacagaatgaacaacaacagcaatctgtgaaagagggaggaaaataatggaaattgatccatcttcatccc |
32506242 |
T |
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| Q |
298 |
caannnnnnncttaaatctcaaacaaatgataaacatatctctcttcactatcgctgaaatctctcttcatccccaatctttcttcaattccagaaaca |
396 |
Q |
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| T |
32506243 |
caattcttttcctcaatcccaaacacatgattcacatatctctcttcactatcgctgaaatctctcttcatccccaatctttcttcaatttcagaaaca |
32506341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 98 - 345
Target Start/End: Original strand, 33172922 - 33173169
Alignment:
| Q |
98 |
gagctaatgcaattataaaccaaacaaagttataaccctttttaattaattattcatcttcacaaaaccacaatcagttagtgtctttacacaatacgag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33172922 |
gagctaatgcaattataaaccaaacaaagttataaccctttttaattaattattcatcttcacaaaaccacaatcagttagtgtctttacacaatacgag |
33173021 |
T |
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| Q |
198 |
cagctgcataaattcacaatcccataaattcaagaatgaacaacaacaacaatttgtgaaagagggaggaaaataatggaaattgatccatcttcatccc |
297 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33173022 |
cagctgcataaattcacaatcccataaattacagaatgaacaacaacaacaatttgtgaaagagggaggaaaataatggaaattgatccatcttcatccc |
33173121 |
T |
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| Q |
298 |
caannnnnnncttaaatctcaaacaaatgataaacatatctctcttca |
345 |
Q |
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||| ||| |||| |||||| ||||| |||||||||||||||| |
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| T |
33173122 |
caatttttttcttcaatcccaaacacatgattaacatatctctcttca |
33173169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 33173159 - 33173198
Alignment:
| Q |
357 |
atctctcttcatccccaatctttcttcaattccagaaaca |
396 |
Q |
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| T |
33173159 |
atctctcttcatccccaatctttcttcaattccagaaaca |
33173198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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