View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16369_high_7 (Length: 288)
Name: NF16369_high_7
Description: NF16369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16369_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 51652200 - 51651944
Alignment:
| Q |
10 |
aagaatatacaacaattttagtgagtctgttaatcaaagaaataaaaattacgaaaaaaggaacagactttgtgaacaatgaatgaagggatatcacacc |
109 |
Q |
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| T |
51652200 |
aagaaaatacaacaattttaatgagtctgttaatcaaagaaatgaaaattacgaaaaaaggaacagactttgtgaacaatgaatgaagggatatcacacc |
51652101 |
T |
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| Q |
110 |
ttccagcaatctcttggaaggtactagtgatgatgaaatctgtgtggttcattgcgaaaagatcagcggtaaattggcaggagaagtgatacttctcttc |
209 |
Q |
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| T |
51652100 |
ttccagcaatctcttggaaggtactagtgatgatgaaatctgtgtggttcattgcgaaaagatcagcggtaaattggcaggagaagtgatacttctcttc |
51652001 |
T |
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| Q |
210 |
gaattttttccagtaaatgtcggattcggggtacttagtcttctcgagtgcatgagc |
266 |
Q |
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| T |
51652000 |
gaattttttccagtaaatgtcggattcggggtacttagtcttctcgagtgcatgagc |
51651944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 19153782 - 19153941
Alignment:
| Q |
107 |
accttccagcaatctcttggaaggtactagtgatgatgaaatctgtgtggttcattgcgaaaagatcagcggtaaattggcaggagaagtgatacttctc |
206 |
Q |
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| T |
19153782 |
accttccagcaatctcttggaaggtacttgtgataataaaatctgtgtggttcattgcaaaaagatcagcggtaaattggcatgagaagtgatacttgtc |
19153881 |
T |
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| Q |
207 |
ttcgaattttttccagtaaatgtcggattcggggtacttagtcttctcgagtgcatgagc |
266 |
Q |
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| T |
19153882 |
ttcaaattttttccagtaaagttcagactcaggatacttggtcttctccagtgcatgagc |
19153941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 28776984 - 28776882
Alignment:
| Q |
107 |
accttccagcaatctcttggaaggtactagtgatgatgaaatctgtgtggttcattgcgaaaagatcagcggtaaattggcaggagaagtgatacttctc |
206 |
Q |
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||||||||||||| |||||| | |||||||| ||||||||||| | | |||||||||| |||||||| || ||||||| || ||||||||||| || |
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| T |
28776984 |
accttccagcaatttcttggtaagtactagttatgatgaaatcggcggaattcattgcgattagatcagctgtgaattggcttgaaaagtgatacttttc |
28776885 |
T |
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| Q |
207 |
ttc |
209 |
Q |
| |
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||| |
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| T |
28776884 |
ttc |
28776882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 28798688 - 28798586
Alignment:
| Q |
107 |
accttccagcaatctcttggaaggtactagtgatgatgaaatctgtgtggttcattgcgaaaagatcagcggtaaattggcaggagaagtgatacttctc |
206 |
Q |
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||||||||||||| |||||| | |||||||| ||||||||||| | | |||||||||| |||||||| || ||||||| || ||||||||||| || |
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| T |
28798688 |
accttccagcaatttcttggtaagtactagttatgatgaaatcggcggaattcattgcgattagatcagctgtgaattggcttgaaaagtgatacttttc |
28798589 |
T |
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| Q |
207 |
ttc |
209 |
Q |
| |
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||| |
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| T |
28798588 |
ttc |
28798586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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