View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16369_high_8 (Length: 244)
Name: NF16369_high_8
Description: NF16369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16369_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 42780399 - 42780627
Alignment:
| Q |
1 |
ctccattactatccacatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacactggtcaatccagctagttttgagcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42780399 |
ctccattactatccacatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacaccggtcaatccagctagttttgagcg |
42780498 |
T |
|
| Q |
101 |
aaaatcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780499 |
aaaatcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctca |
42780598 |
T |
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| Q |
201 |
ccttgcaagtactcaaagaactgcttttt |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42780599 |
ccttgcaagtactcaaagaactgcttttt |
42780627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29539443 - 29539215
Alignment:
| Q |
1 |
ctccattactatccacatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacactggtcaatccagctagttttgagcg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29539443 |
ctccattactatccacatcacttaaaccattctctaatgccctaaccaaattctcgaagaagtttttagtcacacgggtcaatccagctagttttgagcg |
29539344 |
T |
|
| Q |
101 |
aaaatcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctca |
200 |
Q |
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||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| | ||||||||||||| |
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| T |
29539343 |
aaaatcgttgaattctttagaggggccttcagcactgaggaatacttggagttccttttcggcacatagatgaagtctctccaagcctgattctgcctca |
29539244 |
T |
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| Q |
201 |
ccttgcaagtactcaaagaactgcttttt |
229 |
Q |
| |
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||||||||||||||||||| || |||||| |
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| T |
29539243 |
ccttgcaagtactcaaagagcttcttttt |
29539215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 29554285 - 29554060
Alignment:
| Q |
4 |
cattactatccacatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacactggtcaatccagctagttttgagcgaaa |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
29554285 |
cattactatccacatcacataaaccattctctaatgccctaaccaaattctcaaagaagtttttagtcacactggtcaatccagccagttttctgcgaaa |
29554186 |
T |
|
| Q |
104 |
atcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctcacct |
203 |
Q |
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|| ||||||| ||| ||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
29554185 |
attgttgaatccttcagacggggcttcagcactgaggaatgcttggagttccttttcggcgcattgatgaagtctctccaaacctgattctgccacacct |
29554086 |
T |
|
| Q |
204 |
tgcaagtactcaaagaactgcttttt |
229 |
Q |
| |
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|||||||||||||||| ||||||||| |
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| T |
29554085 |
tgcaagtactcaaagagctgcttttt |
29554060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 42194211 - 42194087
Alignment:
| Q |
75 |
ctggtcaatccagctagttttgagcgaaaatcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaa |
174 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42194211 |
ctggtcaatccagctagtttggtgcgaaaatcgttgaattctttagacgggccttcagcactgaggaatacttggagttccttttcggcgcattgatgaa |
42194112 |
T |
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| Q |
175 |
gtctctccaaacttgattctgcctc |
199 |
Q |
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|||||||||||| |||||||||||| |
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| T |
42194111 |
gtctctccaaacctgattctgcctc |
42194087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42194735 - 42194659
Alignment:
| Q |
1 |
ctccattactatccacatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacactg |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| |
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| T |
42194735 |
ctccattactatccacatcacataaaccattctctaatgccctgaccaaattctcgaagaagtttttagtcacactg |
42194659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 42193985 - 42193956
Alignment:
| Q |
200 |
accttgcaagtactcaaagaactgcttttt |
229 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
42193985 |
accttgcaagtactcaaagaactgcttttt |
42193956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 25212027 - 25211907
Alignment:
| Q |
83 |
tccagctagttttgagcgaaaatcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctcc |
182 |
Q |
| |
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|||||||| ||||| || || ||||||||||||||||| || |||||| | |||||||| || ||||| ||||| || ||||||||||||||||| |
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| T |
25212027 |
tccagctaattttgtacggaagtcgttgaattctttagattggccttcagcagtgaggaattgctgtagttctttttcagcacattgatgaagtctctct |
25211928 |
T |
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| Q |
183 |
aaacttgattctgcctcacct |
203 |
Q |
| |
|
| || |||||||| |||||| |
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| T |
25211927 |
agaccagattctgcttcacct |
25211907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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