View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16369_low_11 (Length: 226)
Name: NF16369_low_11
Description: NF16369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16369_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 43576381 - 43576576
Alignment:
| Q |
15 |
aagaagagttgccaagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttga |
114 |
Q |
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| T |
43576381 |
aagaagagttgccaagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggattttcatttga |
43576480 |
T |
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| Q |
115 |
agctccatcaatattgcacttaatccaaaattgaagaggaggactccaaatcacttccttgataattggagctctaggttgatgagtagagacatt |
210 |
Q |
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| T |
43576481 |
agctccatcaatattgcacttaatccaaaattgaagaggaggactccaaatcacttccttgataattggaactctaggttgatgagtagagacatt |
43576576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 61 - 210
Target Start/End: Original strand, 32247359 - 32247508
Alignment:
| Q |
61 |
ttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaatattgcacttaatccaaaattgaagaggaggactc |
160 |
Q |
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| T |
32247359 |
ttcatgatttctaaatattccaccacaagctgagctgccaggatttccatttgaagctccatcaatattgcacttaatccaagattgaagaggaggactc |
32247458 |
T |
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| Q |
161 |
caaatcacttccttgataattggagctctaggttgatgagtagagacatt |
210 |
Q |
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| T |
32247459 |
caaatcacttccttgataattggagctctaggttgatgagtagagacatt |
32247508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 32246532 - 32246573
Alignment:
| Q |
15 |
aagaagagttgccaagaggctcagcaaaacaacaaacaaaat |
56 |
Q |
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| T |
32246532 |
aagaagagttctcaagaggcttagcaaaacaacaaacaaaat |
32246573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 21852377 - 21852548
Alignment:
| Q |
27 |
caagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaat |
126 |
Q |
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||||||| |||| ||| || |||| |||||| ||||||| || ||||| || || |||||| | |||| || ||||||||| | |||||||||||||| |
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| T |
21852377 |
caagaggttcagtaaagcagcaaagaaaatctgcttcattgttcctaaaaatgcctccacaacttaagtttcctggatttccaatggaagctccatcaat |
21852476 |
T |
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| Q |
127 |
attgcacttaatccaa-aattgaagaggaggactccaaatcacttccttgataattggagctctaggttgatg |
198 |
Q |
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| T |
21852477 |
attgcacttaatccaagaattg-agaggtggactccagataacttctttaatagtaggagctctaggatgatg |
21852548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 10512802 - 10512882
Alignment:
| Q |
62 |
tcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaatattgcacttaatccaa |
142 |
Q |
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||||||| |||||| || |||||||| | ||||| |||||||| ||||||||||| ||| | || ||||| ||||||||| |
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| T |
10512802 |
tcatgatctctaaaaataccaccacatacagagtttccaggattaccatttgaagcaccaccgatgttgcatttaatccaa |
10512882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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