View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16369_low_2 (Length: 532)

Name: NF16369_low_2
Description: NF16369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16369_low_2
NF16369_low_2
[»] chr4 (2 HSPs)
chr4 (8-518)||(34317711-34318221)
chr4 (13-65)||(2071342-2071394)
[»] chr7 (4 HSPs)
chr7 (18-390)||(33821812-33822187)
chr7 (8-390)||(23897755-23898140)
chr7 (8-348)||(7319591-7319934)
chr7 (294-390)||(31394866-31394962)
[»] chr1 (1 HSPs)
chr1 (8-398)||(33575746-33576138)
[»] scaffold0027 (1 HSPs)
scaffold0027 (8-187)||(150324-150505)
[»] chr6 (2 HSPs)
chr6 (286-390)||(14586169-14586273)
chr6 (286-390)||(14620700-14620804)
[»] chr2 (1 HSPs)
chr2 (108-161)||(7300382-7300435)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 518
Target Start/End: Complemental strand, 34318221 - 34317711
Alignment:
Q  8 ccaagaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttg 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  34318221 ccaacaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtcgattgtttcttaagtttttatggcttttgtatgtttg 34318122  T
Q  106 gctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatactattcgctttgatggctg 205  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  34318121 gctggtttggaatgaatgcaacaacgagatttttaataacatccaagcccccattgtgcagcttttagatagagttaaataccactcgctttggtggctg 34318022  T
Q  206 cagaaagctaataatgtcacattcatgtacggttctcatatatgatggtcggacccctttatttatttgggtactgaccgtgtttctgtaattattatac 305  Q
     ||   |||||||||| ||||||||||||||||||||||| ||| ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  34318021 aag---gctaataatgccacattcatgtacggttctcatagatggtggtcggacctttttatttgtttgggtactgaccgtgtttctgtaattattatac 34317925  T
Q  306 ttgactgattgtttcttggggcgacttccttgatacaccttgtgatagggaggtatcatcgccttcgttaatatatcccatttttgatttttc-nnnnnn 404  Q
    ||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||           
T  34317924 ttgactggttgtttcttgggacgacttccttggtacaccttgtaatagggaggtatcatcgccttcgttaatatattccattttttatttttcaaaaaaa 34317825  T
Q  405 nntctaggcaataatgtaaataaatcttgctaacgtaattttaaatattttcctagtatactacaaacaattgttggacttttcttctttatatattttc 504  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317824 aatctaggcaataatgtaaataaatcttgctaacgtaattttaaatattttcctagtatactacaaacaattgttggacttttcttctttatatattttc 34317725  T
Q  505 ttagcaaacaaatt 518  Q
    ||| ||||||||||    
T  34317724 ttaccaaacaaatt 34317711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 2071394 - 2071342
Alignment:
Q  13 aatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaa 65  Q
    |||||||||||| | ||| ||||||||||||||| || | |||||||||||||    
T  2071394 aatattagtgactattttattcagtttattcattgtagaggtcattcgaagaa 2071342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 33821812 - 33822187
Alignment:
Q  18 tagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttggctggtttga 115  Q
    |||||| ||||||||||||||||||||||||||| |||| |||||| || |||  | ||||||  ||||||||||||||||||  ||||||| ||||||     
T  33821812 tagtgatcacttttttcagtttattcattatacaggtcactcgaagcagggtcgatcgtttctacagcttttatggcttttgtgagtttggcaggtttgg 33821911  T
Q  116 aatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatactattcgctttgatggctgcagaaagcta 215  Q
    |||||  | || ||| ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||| | ||  |||| |||||| ||   ||||    
T  33821912 aatgagcgtaataacaggatttttaataacatccaagtccccattattcagcttttagatagagttaaataccactcattttggtggctgaag---gcta 33822008  T
Q  216 ataatgtcacattcatgtacggttctcatatatgatggtcggacccctttatttatttgggta----ctgaccgtgtttctgtaattattatacttgact 311  Q
    |||||||||| ||||||||||||||||||| ||| | ||||||||| || |||| ||||||||    |||||||||||| ||||||||| ||||||||||    
T  33822009 ataatgtcactttcatgtacggttctcatagatggtagtcggaccctttgatttgtttgggtatcgactgaccgtgtttttgtaattataatacttgact 33822108  T
Q  312 gattgtttcttggggcgacttccttgatacaccttgtgatagggaggtatcatcgccttcgttaatatatcccattttt 390  Q
    |||||||||||| |  | |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||||    
T  33822109 gattgtttcttgagatggcttccttggtacaccttgtgctagggaggtatcatcgccttagttaatatattccattttt 33822187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 23898140 - 23897755
Alignment:
Q  8 ccaagaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttg 105  Q
    |||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||  | ||||||   ||||||||||||||||| ||||||    
T  23898140 ccaataatattagtgatcacttttttcagtttattcattgtacaggtcactcgaagaagcgtcgatcgtttctacggcttttatggcttttgtgtgtttg 23898041  T
Q  106 gctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatactattcgctttgatggctg 205  Q
    ||  ||||| |||||  | || |||  ||||||||||||||||||| || ||||| |||| ||||||||||||||||||||| | ||  |||||||||||    
T  23898040 gcaagtttggaatgagcgtaataacatgatttttaataacatccaaacccccattatgcaacttttagatagagttaaataccactcattttgatggctg 23897941  T
Q  206 cagaaagctaataatgtcacattcatgtacggttctcatatatgatggtcggacccctttatttatttgggta----ctgaccgtgtttctgtaattatt 301  Q
     |||    |||||||||||| ||||||||||||||| ||| ||| | ||||||||| || |||| ||| ||||    |||||||||||| ||||||||||    
T  23897940 aagat---taataatgtcactttcatgtacggttcttatagatggtagtcggaccctttgatttgtttaggtatcggctgaccgtgtttttgtaattatt 23897844  T
Q  302 atacttgactgattgtttcttggggcgacttccttgatacaccttgtgatagggaggtatcatcgccttcgttaatatatcccattttt 390  Q
    ||||||||||||||||||||||||  | |||||||| || |||||||| |||||||||||||||||||| |||||||||| || |||||    
T  23897843 atacttgactgattgtttcttgggatggcttccttggtataccttgtgctagggaggtatcatcgccttagttaatatattccgttttt 23897755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 7319591 - 7319934
Alignment:
Q  8 ccaagaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttg 105  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||| | || |||||||||||||  |  |||||  | |||||||| ||||||| ||||||    
T  7319591 ccaataatattagtgatcacttttttcaatttattcattatacaggccactcgaagaagcgtcgatcctttctacaacttttatgacttttgtgtgtttg 7319690  T
Q  106 gctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatactattcgctttgatggctg 205  Q
     | |||||| |||||    || ||| |||||||||| ||||||||| || ||||| |||||||||||||||||||||||||| | ||| | || ||| ||    
T  7319691 acaggtttggaatgagcataataacaggatttttaacaacatccaaacccccattatgcagcttttagatagagttaaataccactcgttgtggtggttg 7319790  T
Q  206 cagaaagctaataatgtcacattcatgtacggttctcatatatgatggtcggacccctttatttatttgggta----ctgaccgtgtttctgtaattatt 301  Q
     ||   | |||||||| ||| ||||||||||||| | ||| ||| |||||||||||  | |||| ||||||||    || ||||||||| ||||||||||    
T  7319791 aag---gttaataatgccactttcatgtacggtttttatagatggtggtcggaccctatgatttgtttgggtatcgactaaccgtgtttttgtaattatt 7319887  T
Q  302 atacttgactgattgtttcttggggcgacttccttgatacaccttgt 348  Q
    | ||||||||||||||||||||||  |||||||||| |||| |||||    
T  7319888 acacttgactgattgtttcttgggatgacttccttggtacatcttgt 7319934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 31394962 - 31394866
Alignment:
Q  294 taattattatacttgactgattgtttcttggggcgacttccttgatacaccttgtgatagggaggtatcatcgccttcgttaatatatcccattttt 390  Q
    |||||||||||||||| |||||||||||||||  | |||||||  ||||||||||| |||| |  |||||||| ||| |||||||||| ||||||||    
T  31394962 taattattatacttgattgattgtttcttgggatggcttccttagtacaccttgtgctaggaaaatatcatcgtcttagttaatatattccattttt 31394866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 33576138 - 33575746
Alignment:
Q  8 ccaagaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttg 105  Q
    |||| ||||||||||| |||||||||||||||||||||| | || |||| |||||||||||||  | ||||||  |||||||||||||||||| ||||||    
T  33576138 ccaacaatattagtgatcacttttttcagtttattcattgttcaggtcactcgaagaagcgtcgatcgtttctacagcttttatggcttttgtgtgtttg 33576039  T
Q  106 gctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatactattcgctttgatggctg 205  Q
    || |||||| ||||||   || |||  ||||||||| |||| |||| || ||||| ||||||| |||||||||||||||||| ||||| | || ||| |     
T  33576038 gcaggtttggaatgaacataataacatgatttttaacaacacccaaacccccattatgcagctcttagatagagttaaataccattcgttgtggtggtt- 33575940  T
Q  206 cagaaagctaataatgtcacattcatgtacggttctcatatatgatggtcggacccctttatttatttgggt----actgaccgtgtttctgtaattatt 301  Q
      ||| | |||||||||||| || |||||||||||| ||| ||| |||||| ||||  |  ||| |||||||    || |||||||||  ||||||||||    
T  33575939 --gaaggttaataatgtcactttaatgtacggttcttatagatggtggtcgaaccctatgctttgtttgggtattgaccgaccgtgttattgtaattatt 33575842  T
Q  302 atacttgactgattgtttcttggggcgacttccttgatacaccttgtgatagggaggtatcatcgccttcgttaatatatcccatttttgatttttc 398  Q
    | ||||||||| |||||| |||||  ||||| |||| |||| |||||| |||| |||| | ||||||||  |||||||||  |||||||||||||||    
T  33575841 acacttgactg-ttgttttttgggatgactttcttggtacatcttgtgctaggaaggtgttatcgccttacttaatatatttcatttttgatttttc 33575746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 150505 - 150324
Alignment:
Q  8 ccaagaatattagtgaccacttttttcagtttattcattatacaagtcattcgaagaagcgtc--ttgtttcttaagcttttatggcttttgtatgtttg 105  Q
    |||| ||||||||||| ||||||||||| |||||||||| |||| |||| ||||||||||||   | ||||||   ||||||||||||||||| ||||||    
T  150505 ccaataatattagtgatcacttttttcaatttattcattgtacaggtcactcgaagaagcgttgatcgtttctaccgcttttatggcttttgtgtgtttg 150406  T
Q  106 gctggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattgtgcagcttttagatagagttaaatac 187  Q
    || |||||  |||||  | || ||| |||||||||||||||||||| || ||||| |||| |||||||||||||||||||||    
T  150405 gcaggttttgaatgagcgtaataacaggatttttaataacatccaaacccccattatgcaacttttagatagagttaaatac 150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 390
Target Start/End: Original strand, 14586169 - 14586273
Alignment:
Q  286 tgtttctgtaattattatacttgactgattgtttcttggggcgacttccttgatacaccttgtgatagggaggtatcatcgccttcgttaatatatccca 385  Q
    |||||||||||||||| |  |||| |||||||||||||||| |  ||| ||  ||||||||||| || | |||| |||| ||||| |||||||||| |||    
T  14586169 tgtttctgtaattattttgattgattgattgtttcttggggtggtttctttagtacaccttgtgctaagcaggtttcattgcctttgttaatatattcca 14586268  T
Q  386 ttttt 390  Q
     ||||    
T  14586269 atttt 14586273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 390
Target Start/End: Original strand, 14620700 - 14620804
Alignment:
Q  286 tgtttctgtaattattatacttgactgattgtttcttggggcgacttccttgatacaccttgtgatagggaggtatcatcgccttcgttaatatatccca 385  Q
    |||||||||||||||| |  |||||||||| |||||||||| |  ||| ||  |||| |||||| || | |||| |||| ||||| ||||||||||  ||    
T  14620700 tgtttctgtaattattttgattgactgattatttcttggggtggtttctttagtacagcttgtgctaagcaggtttcattgcctttgttaatatattaca 14620799  T
Q  386 ttttt 390  Q
    |||||    
T  14620800 ttttt 14620804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 7300435 - 7300382
Alignment:
Q  108 tggtttgaaatgaatgcaacaacgggatttttaataacatccaagcctccattg 161  Q
    ||||||| |||||||||||||||||  | ||||||||||||||| || ||||||    
T  7300435 tggtttggaatgaatgcaacaacggactatttaataacatccaaacccccattg 7300382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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