View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16369_low_8 (Length: 325)
Name: NF16369_low_8
Description: NF16369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16369_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 168310 - 168465
Alignment:
| Q |
19 |
aaggtttctgtggtggttattgaaaagcagatttcttgcaagggaaattttttcaaatcgtggataaacctcttcataattacattaagttagtagttgt |
118 |
Q |
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| T |
168310 |
aaggtttctgtggtggttattgaaaagcagatttcttgcaagggaaattttttcaaatcgtggataaacctcttcataattacattaagttagtagttgt |
168409 |
T |
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| Q |
119 |
cgattaattgaattttctcaacaataattggttgaatgctagtagtataatagaaa |
174 |
Q |
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| T |
168410 |
cgattaattgaattttctcaacaataattggttgaatgctagtagtataatagaaa |
168465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 168653 - 168802
Alignment:
| Q |
166 |
taatagaaaatagtgtatcgaaaagctcaagatgtcattatctttcaacataaaaagcttatcttaggtaaccttgtagaatctattaaatagtgatcat |
265 |
Q |
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| T |
168653 |
taatagaaaatagtgtatcgaaaagctcaagatgtcattatctttcaacataaaaagcttatcttaggtaaccttgtagaatctattaaatagtgatcat |
168752 |
T |
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| Q |
266 |
ggtggtggtttaaaatacatgtcacatgattcaagtctgaactcttcatc |
315 |
Q |
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| T |
168753 |
ggtggtggtttaaaatacatgtcacatgattcaagtctgaactcttcatc |
168802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 32780321 - 32780425
Alignment:
| Q |
185 |
gaaaagctcaagatgtcattatctttcaacataaaaagcttatcttaggtaaccttgtagaatctattaaatagtgatcatggtggtggtttaaaataca |
284 |
Q |
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| T |
32780321 |
gaaaagctcgaaatatctttatctttcaagataaataacttgtcttaagtaacattgtagaaactattaacttgtaatattggtggtggcttaaaattca |
32780420 |
T |
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| Q |
285 |
tgtca |
289 |
Q |
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| T |
32780421 |
tgtca |
32780425 |
T |
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