View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16370_high_3 (Length: 290)
Name: NF16370_high_3
Description: NF16370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16370_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 34379902 - 34380158
Alignment:
| Q |
17 |
atactccatccaaacattctgttgatgatgatgtccaataataaatgcctcaatccccaacaaatcagagttcccaaaagtgaaacaataaatccaacta |
116 |
Q |
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| T |
34379902 |
atactccatccaaacattccgttgatgatgatgtccaataataaatgcctcaatccccaacaaatcagagttcccaaaagtgaaacaataaatccaacta |
34380001 |
T |
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| Q |
117 |
ttactctttgccacattactcactttatataacaatctctctccggtcaccctcaactccgccccatcaaacatcaatgtcacaaccggtaaaattggaa |
216 |
Q |
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| T |
34380002 |
ttactctttgctacattactcactttatataacaatctctctccggtcaccctcaactccgccccatcaaacatcaatgtcacaaccggtaaaactggaa |
34380101 |
T |
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| Q |
217 |
gagtcgacccgattggaaccctaaaacacaaatccataacactttggaaaacaaact |
273 |
Q |
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| T |
34380102 |
gagtcgacccgattggaaccctaaaacacaaatccataacaccttggaaaacaaact |
34380158 |
T |
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Back To:
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 30634065 - 30634152
Alignment:
| Q |
19 |
actccatccaaacattctgttgatgatgatgtccaataataaatgcctcaatccccaacaaatcagagttcccaaaagtgaaacaata |
106 |
Q |
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| T |
30634065 |
actccatccacacattcatttgatgataatgtccaataatatatgcctcaattcccaacaaatctgaatttccaaacgtgaaacaata |
30634152 |
T |
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