View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16370_low_1 (Length: 394)
Name: NF16370_low_1
Description: NF16370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16370_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 39278343 - 39277978
Alignment:
| Q |
1 |
tggtgtttatgtcatataaacttgaataaaccaatccaaaccaaccctaattaagtcaaatacttgaaaaatactactaaaacaaaatacgaaattgaat |
100 |
Q |
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| T |
39278343 |
tggtgtttatgtcatataaacttgaataaaccaatccaaaccaaccctaa----gtcaaatact-----------actaaaacaaaatacgaaattgaat |
39278259 |
T |
|
| Q |
101 |
tgaaacaagaaccaaaca---atcccaattcacaagtctagagaactctatgtgatacaattggtaaagtaaaagaatctctaacatcaacatgggatct |
197 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39278258 |
tgaaacaagaaccaaacattaatcccaattcacaagtctagagaactctatgtgatacaattggtaaagtaaaagaatctctaacatcaacatggaatct |
39278159 |
T |
|
| Q |
198 |
tagaggtgaaccattccataacatgaagaggagccttaaccaattccaaagcaagttccacaattactgtcaagcacaaacagcaggggcatatgcatgt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39278158 |
tagaggtgaaccattccataacatgaagaggagccttaaccaattccaaagcaagttccacaattactgtcaagcacaaacagcaggggcatatgcatgt |
39278059 |
T |
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| Q |
298 |
cagtgtcaacctgcaaatattatgtagtaaagttttagtctttttgatattttcattcaatcaaaatcaaacccatatcac |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39278058 |
cagtgtcaacctgcaaatattatgtagtaaagttttagtctttttgatattttcattcaatcaaaatcaaactcatatcac |
39277978 |
T |
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