View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16370_low_2 (Length: 318)
Name: NF16370_low_2
Description: NF16370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16370_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 2943778 - 2943494
Alignment:
| Q |
20 |
ataagctagtgaatggggtacccatgaaaatggtgtgcccatgaactacctgcagaatgataggtgctagagtgctacatgctccactagaagttatgtc |
119 |
Q |
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| T |
2943778 |
ataagctagtgaatggggtgcccatgaaaatggtgtgcccatgaactacctgcagaatgataggtgctagagtgctacatgctccactagaagttatgtc |
2943679 |
T |
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| Q |
120 |
tatgctagaagtttttctttattgagatagaggaagtctactagaagttatgaaaataatttgtaacatatatatcctctcaaggtgtatctttttgtct |
219 |
Q |
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| T |
2943678 |
tatgctagaagtttttctttattgagatagaggaagtctactagaagttatgaaaataatttgtaacatatatatcctctcaaggtgtctctttttgtct |
2943579 |
T |
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| Q |
220 |
gaaagacaattaataataaaattccgacaaaggccaatttaaggcgtagagaagttcttccaactaattatgttatgtgcctatg |
304 |
Q |
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| T |
2943578 |
gaaagacaattaataatagaattccgacaaaggccaatttaaggcgtagagaagttcttccaactaattatgttatgtgcctatg |
2943494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 160 - 299
Target Start/End: Original strand, 36397656 - 36397790
Alignment:
| Q |
160 |
ctagaagttatgaaaataatttgtaacatatatatcctctcaaggtgtatctttttgtctgaaagacaattaataataaaattccgacaaaggccaattt |
259 |
Q |
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| T |
36397656 |
ctagaagttatgaaaataatttgtaacatgt----cctctcaaggtgtctctttttggctgaaaaacaattaataatagaactccgacaa-ggccaattt |
36397750 |
T |
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| Q |
260 |
aaggcgtagagaagttcttccaactaattatgttatgtgc |
299 |
Q |
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| T |
36397751 |
aaggcgtagagaagtccttccagctaattatgttatgtgc |
36397790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 36396942 - 36396976
Alignment:
| Q |
72 |
cagaatgataggtgctagagtgctacatgctccac |
106 |
Q |
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| T |
36396942 |
cagaatgataggtgctagagtgctacatgctccac |
36396976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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