View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16371_high_1 (Length: 794)
Name: NF16371_high_1
Description: NF16371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16371_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 675; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 19 - 784
Target Start/End: Original strand, 34779571 - 34780339
Alignment:
| Q |
19 |
agccaatttatgggtaggtcacagattatatttgaccggggggttctcaatcgagtcgtaactggagtcttgaaaagtatttgtttaagaaaaaatgagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34779571 |
agccaatttatgggtaggtcacagattatatttgaccggggggttctcaatcgagtcgcaactggagtcttgaaaagtatttgtttaagaaaaaatgagc |
34779670 |
T |
|
| Q |
119 |
cacatctctcttggactaaatacaaaactagtggtaggggatgggtacactgatgcagta---gtataagccgccatattttattttgattgcttatgtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34779671 |
cacatctctcttggactaaatacaaaactagtggtaggggatcggtacactgatgcagtagtagtataagccgccatattttattttgattgcttatgtg |
34779770 |
T |
|
| Q |
216 |
tacaatacaacattgaagaatattttgataccaacaagtacccttttacttgtaggaccaaccgtggggcttataaaagggaaatgtgggaaaccttttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34779771 |
tacaatacaacattgaagaatattttgataccaacaagtacccttttacttgtaggaccaaccgtggggcttataaaagggaaatgtgggaaaccttttc |
34779870 |
T |
|
| Q |
316 |
tctcagggcaaaacataaatcctatttggtctcaacacctaaaagtaactaataagaactttctttctacttcttagcatacttaacaacttaagtaaat |
415 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34779871 |
tctcagggcaaaacataaatcctatttgttctcaacacctaagagtaactaataagaactttctttctacttcttagtatacttaacaacttaagtaaat |
34779970 |
T |
|
| Q |
416 |
atactgcaaagaagctatacaccatgttggtggaaattgcaattgctttattggtgattgctctgtttatacacttacgtccaacacctactgcaaaatc |
515 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| || || ||||| | |||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
34779971 |
atactacaaagaagctatacaccatgttggtggaacttgcagttactctattgctcattgctctcttcttacacttgcgtccaacacctactgcaaaatc |
34780070 |
T |
|
| Q |
516 |
aaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacact |
615 |
Q |
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| T |
34780071 |
aaaggctcttcgccaccttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataacccacttcttcaccacact |
34780170 |
T |
|
| Q |
616 |
cttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttcc |
715 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780171 |
cttatcaagttaggaaagcgttatggccctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttcc |
34780270 |
T |
|
| Q |
716 |
ttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatg |
784 |
Q |
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| T |
34780271 |
ttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatg |
34780339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 286 - 784
Target Start/End: Complemental strand, 34764265 - 34763773
Alignment:
| Q |
286 |
ttataaaagggaaatgtgggaaaccttttctctcagggcaaaacataaatcctatttggtctcaacaccta----aaagtaactaataagaactttcttt |
381 |
Q |
| |
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||||||||||| | ||| |||||||||||||||||||||||||||| || |||||||| |||||||||||| | |||||| ||||| ||| || ||| |
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| T |
34764265 |
ttataaaaggggagtgttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacacctacctaagagtaaccaataataacattgttt |
34764166 |
T |
|
| Q |
382 |
ctacttcttagcatacttaacaacttaagtaaatatactgcaaagaagctatacaccatgttggtggaaattgcaattgctttattggtgattgctctgt |
481 |
Q |
| |
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||| ||||||| || |||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34764165 |
cta-ttcttagtatccttaacaacttaagcaaatata-tacaa--------tacaccatgttggtggaaattgcaattgctttattggtgattgctcttt |
34764076 |
T |
|
| Q |
482 |
ttatacacttacgtccaacacctactgcaaaatcaaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatct |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
34764075 |
ttatacacttacgtccaacacctactgcaaaatcaaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttcctttcattggtcatct |
34763976 |
T |
|
| Q |
582 |
tcatcttttggataacccacttcttcaccacactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgtt |
681 |
Q |
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| T |
34763975 |
tcatcttttggataacccacttcttcaccacactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgtt |
34763876 |
T |
|
| Q |
682 |
gttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacct |
781 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763875 |
gttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacct |
34763776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 283 - 784
Target Start/End: Complemental strand, 34756281 - 34755797
Alignment:
| Q |
283 |
ggcttataaaagggaaatgtgggaaaccttttctctcagggcaaaacataaatcctatttggtctcaacacctaaaagtaactaataagaactttctttc |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||||||| ||||||| || |||| |
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| T |
34756281 |
ggcttataaaagggaaatgtgggaaaccttttacttcagagcaaaacatacatcctatttgttctcaacacctaa----------taagaacattgtttc |
34756192 |
T |
|
| Q |
383 |
tacttcttagcatacttaacaacttaa-gtaaatatactgcaaagaagctatacaccatgttggtggaaattgcaattgctttattggtgattgctctgt |
481 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||||| || || ||||| | |||||||| | |
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| T |
34756191 |
tacttcttattatacttaacaacttaaagtaaatatactacaa--------tacaccatgttggtggaacttgcagttactctattgctcattgctctct |
34756100 |
T |
|
| Q |
482 |
ttatacacttacgtccaacacctactgcaaaatcaaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatct |
581 |
Q |
| |
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| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||| || || || ||||| |||||||||| ||| |||||||| |
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| T |
34756099 |
tcttacacttgcgtccaacacctactgcaaaatcaaaggctcttcgccaccttcccaatcctccgagtcccaaacctcgtcttccatccattggtcatct |
34756000 |
T |
|
| Q |
582 |
tcatcttttggataacccacttcttcaccacactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgtt |
681 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| || |
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|
| T |
34755999 |
tcaccttttggataaccctcttcttcaccacactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccatt |
34755900 |
T |
|
| Q |
682 |
gttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacct |
781 |
Q |
| |
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||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34755899 |
gttgcctcaacccctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtcttacct |
34755800 |
T |
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